Does Reproduction Shorten Telomeres? Towards Integrating Individual Quality with Life‐History Strategies in Telomere Biology
Sudyka, J.
BioEssays
Cytosolic translational responses differ under conditions of severe short-term and long-term mitochondrial stress
Samluk L, Urbanska M, Kisielewska K, Mohanraj K, Kim MJ, Machnicka K, Liszewska E, Jaworski J, Chacinska A.
Mol.Biol. Cell 30(15):1864-1877. doi: 10.1091/mbc.E18-10-0628.
Non-canonical translation initiation in yeast generates a cryptic pool of mitochondrial proteins
Monteuuis G, Miścicka A, Świrski M, Zenad L, Niemitalo O, Wrobel L, Alam J, Chacińska A, Kastaniotis AJ, Kufel J.
Nucleic Acids Res. 47(11):5777-5791
The role of the GATA transcription factor AreB in regulation of nitrogen and carbon metabolism in Aspergillus nidulans
Chudzicka-Ormaniec, P., Macios, M., Koper, M., Weedall, G. D., Caddick, M. X., Weglenski, P., & Dzikowska, A.
FEMS Microbiology Letters
Silver route to cuprate analogs
Gawraczyński, J., Kurzydłowski, D., Ewings, R. A., Bandaru, S., Gadomski, W., Mazej, Z., … Grochala, W.
Proceedings of the National Academy of Sciences, 116(5), 1495-1500
Statistical Properties of Lasso-Shape Polymers and Their Implications for Complex Lasso Proteins Function
Dabrowski-Tumanski, P., Gren, B., & Sulkowska, J. I.
Polymers, 11(4), 707
Beyond Oxides: Nitride as a Ligand in a Neutral (IrNO3)-N-IX Molecule Bearing a Transition Metal at High Oxidation State
Wolański, Ł, Domański, M., Grochala, W., & Szarek, P.
Chemistry - A European Journal
DCA-MOL: A PyMOL Plugin To Analyze Direct Evolutionary Couplings
Jarmolinska, A. I., Zhou, Q., Sulkowska, J. I., & Morcos, F.
Journal of Chemical Information and Modeling, 59(2), 625-629
Dendritic Spines Taxonomy: The Functional and Structural Classification center dot Time-Dependent Probabilistic Model of Neuronal Activation
Urban, P., Rezaei, V., Bokota, G., Denkiewicz, M., Basu, S., & Plewczyński, D.
Journal of Computational Biology, 26(4), 322-335
Upregulation of MLK4 promotes migratory and invasive potential of breast cancer cells
Marusiak, A. A., Prelowska, M. K., Mehlich, D., Lazniewski, M., Kaminska, K., Gorczynski, A., . . . Nowis, D.
Oncogene, 38(15), 2860-2875
Learning directed acyclic graphs by determination of candidate causes for discrete variables
Tabar, V. R., Zareifard, H., Salimi, S., & Plewczynski, D.
Journal of Statistical Computation and Simulation, 89(10), 1957-1970
Borohydride as Magnetic Superexchange Pathway in Late Lanthanide Borohydrides
Wegner, W., Leusen, J. V., Majewski, J., Grochala, W., & Kögerler, P.
European Journal of Inorganic Chemistry, 2019(13), 1776-1783
FunPred 3.0: improved protein function prediction using protein interaction network
Saha, S., Chatterjee, P., Basu, S., Nasipuri, M., & Plewczynski, D.
PeerJ, 7
Preparative Electrosynthesis of Strong Oxidizers at Boron-Doped Diamond Electrode in Anhydrous HF
Połczyński, P., Jurczakowski, R., Grzelak, A., Goreshnik, E., Mazej, Z., & Grochala, W.
Chemistry – A European Journal, 25(19)
Novel COL12A1 variant as a cause of mild familial extracellular matrix-related myopathy
Jezela‐Stanek, A., Walczak, A., Łaźniewski, M., Kosińska, J., Stawiński, P., Pienkowski, V. M., . . . Płoski, R.
Clinical Genetics, 95(6), 736-738
Intermingling of chromosome territories
Szczepińska, T., Rusek, A. M., & Plewczynski, D.
Genes, Chromosomes and Cancer, 58(7), 500-506
Small extracellular vesicles containing arginase-1 suppress T-cell responses and promote tumor growth in ovarian carcinoma
Czystowska-Kuzmicz, M., Sosnowska, A., Nowis, D., Ramji, K., Szajnik, M., Chlebowska-Tuz, J., . . . Golab, J.
Nature Communications, 10(1)
Peroxiredoxin-5 is a negative survival predictor in ovarian cancer
Sienko, J., Gaj, P., Czajkowski, K., & Nowis, D.
Ginekologia Polska, 90(1), 1-6
Atomic/Ionic Radius as Mathematical Limit of System Energy Evolution
Szarek, P., Chlebicki, A., & Grochala, W.
The Journal of Physical Chemistry A, 123(3), 682-692
Gli Proteins: Regulation in Development and Cancer
Niewiadomski, P., Niedziółka, S. M., Markiewicz, Ł, Uśpieński, T., Baran, B., & Chojnowska, K.
Cells, 8(2), 147
Differential Expression of Mitochondrial Biogenesis Markers in Mouse and Human SHH-Subtype Medulloblastoma
Łastowska, M., Karkucińska-Więckowska, A., Waschek, J., & Niewiadomski, P.
Cells, 8(3), 216
Transposable elements contribute to fungal genes and impact fungal lifestyle
Muszewska, A., Steczkiewicz, K., Stepniewska-Dziubinska, M., & Ginalski, K.
Scientific Reports, 9(1)
Insights into reactivity patterns of Ag(II)SO4 with respect to fluoro- and trifluoromethyl-substituted aromatics
Leszczyński, P., Budniak, A., Grzeszkiewicz, M., Gawraczyński, J., Dobrzycki, Ł, Malinowski, P., Jaroń T., Cyrański M.K., Szarek P., Mazej Z., Grochala, W.
Journal of Fluorine Chemistry, 218, 105-110
qDSB-Seq is a general method for genome-wide quantification of DNA double-strand breaks using sequencing
Zhu, Y., Biernacka, A., Pardo, B., Dojer, N., Forey, R., Skrzypczak, M., . . . Rowicka, M.
Nature Communications, 10(1)
Poly-Saturated Dolichols from Filamentous Fungi Modulate Activity of Dolichol-Dependent Glycosyltransferase and Physical Properties of Membranes
Gryz, E., Perlińska-Lenart, U., Gawarecka, K., Jozwiak, A., Piłsyk, S., Lipko, A., . . . Kruszewska, J.
International Journal of Molecular Sciences, 20(12), 3043
Polycyclic Aromatic Hydrocarbons and their Adducts with Solvents from Ag(II)SO4-Based Oxidative C-C Coupling
Leszczyński, P. J., Jaroń, T., Malinowski, P. J., Gawraczyński, J., Mazej, Z., & Grochala, W.
Polycyclic Aromatic Compounds, 1-10.
Rearrangements within the U6 snRNA Core during the Transition between the Two Catalytic Steps of Splicing.
Eysmont, K., Matylla-Kulińska, K., Jaskulska, A., Magnus, M., & Konarska, M. M. (2019).
Molecular Cell, 75, 1-11
Accelerated acquisition in pure-shift spectra based on prior knowledge from 1H NMR
Shchukina, A., Kaźmierczak, M., Kasprzak, P., Davy, M., Akien, G. R., Butts, C. P., & Kazimierczuk, K.
Chemical Communications
PiPred – a deep-learning method for prediction of pi-helices in protein sequences
Ludwiczak, J., Winski, A., Neto, A. M., Szczepaniak, K., Alva, V., & Dunin-Horkawicz, S.
Scientific Reports, 9(1)
PiPred – a deep-learning method for prediction of pi-helices in protein sequences
Ludwiczak, J., Winski, A., Neto, A. M., Szczepaniak, K., Alva, V., & Dunin-Horkawicz, S.
Scientific Reports, 9(1)
A High-Resolution Luminescent Assay for Rapid and Continuous Monitoring of Protein Translocation across Biological Membranes
Pereira, G. C., Allen, W. J., Watkins, D. W., Buddrus, L., Noone, D., Liu, X., Chacińska, A., . . . Collinson, I.
Journal of Molecular Biology, 431(8), 1689-1699
Computational methods used to explore transport events in biological systems
Pieńko, T., & Trylska, J.
Journal of Chemical Information and Modeling, 59(5), 1772-1781.
Vitamin B12 transports modified RNA into E. coli and S. Typhimurium cells
Giedyk, M., Jackowska, A., Równicki, M., Kolanowska, M., Trylska, J., & Gryko, D.
Chem Communications, 55(6), 763-766.
Carotenoid‐based coloration correlates with the hatching date of Blue Tit Cyanistes caeruleus nestlings
Janas, K., Lutyk, D., Sudyka, J., Dubiec, A., Gustaffson, L., Cichoń, M., & Drobniak, S.
Ibis
Towards catalytic antibiotics: redesign of aminoglycosides to catalytically disable bacterial ribosomes
Smolkin, B., Khononov, A., Pieńko, T., Shavit, M., Belakhov, V., Trylska, J., & Baasov, T.
ChemBioChem, 20(2), 247-259
Rearrangements within the U6 snRNA Core during the Transition between the Two Catalytic Steps of Splicing
Eysmont, K., Matylla-Kulińska, K., Jaskulska, A., Magnus, M., & Konarska, M. M
Molecular Cell
N1-Propargylguanosine Modified mRNA Cap Analogs: Synthesis, Reactivity, and Applications to the Study of Cap-Binding Proteins
Kopcial, M., Wojtczak, B. A., Kasprzyk, R., Kowalska, J., & Jemielity, J. (2019).
Molecules, 24(10), 1899.
Fluorescent Turn‐On Probes for the Development of Binding and Hydrolytic Activity Assays for MRNA Cap‐Recognizing Proteins
Kasprzyk. R., Starek B.J., Ciechanowicz, S., Kubacka D., Kowalska J., Jemielity J. (2019).
Chemistry – A European Journal, 25(27), 6646–6646
Inhibition of proteasome rescues a pathogenic variant of respiratory chain assembly factor COA7
Mohanraj, K., Wasilewski, M., Benincá, C., Cysewski, D., Poznanski, J., Sakowska, P., Bugajska, Z., Deckers, M., Dennerlein, S., Fernandez-Vizarra, E., Rehling, P., Dadlez, M., Zeviani, M. & Chacinska, A. (2019).
EMBO Mol Med, 11(5), pii: e9561.
Mitochondrial stress-dependent regulation of cellular protein synthesis
Topf U., Uszczynska-Ratajczak B., Chacinska A. (2019).
Journal of Cell Science, 132
Spatial Spin-Wave Modulator for Quantum-Memory-Assisted Adaptive Measurements
Lipka, M., Leszczyński, A., Mazelanik, M., Parniak, M., & Wasilewski, W. (2019).
Physical Review Applied, 11(3)
Quantum Optics of Spin Waves through ac Stark Modulation
Parniak, M., Mazelanik, M., Leszczyński, A., Lipka, M., Dąbrowski, M., & Wasilewski, W. (2019).
Physical Review Letters, 122(6)
Coherent spin-wave processor of stored optical pulses
Mazelanik, M., Parniak, M., Leszczyński, A., Lipka, M., & Wasilewski, W. (2019).
Npj Quantum Information, 5(1)
Proteins’ Knotty Problems
Jarmolinska, A. I., Perlinska, A. P., Runkel, R., Trefz, B., Ginn, H. M., Virnau, P., & Sulkowska, J. I. (2019).
Journal of Molecular Biology, 431(2), 244-257
KnotProt 2.0: a database of proteins with knots and other entangled structures
Dabrowski-Tumanski, P., Rubach, P., Goundaroulis, D., Dorier, J., Sułkowski, P., Millett, K. C., . . . Sułkowska, J. I. (2019).
Nucleic Acids Research, 47(D1), D367-D375
Role of Metal Centers in Tuning the Electronic Properties of Graphene-Based Conductive Interfaces
Osella, S., Kiliszek, M., Harputlu, E., Unlu, C. G., Ocakoglu, K., Trzaskowski, B., & Kargul, J. (2019).
The Journal of Physical Chemistry C, 123(14), 8623-8632
2-Methyltetrahydrofurane as a solvent of choice for spontaneous metathesis/isomerization sequence
Rajkiewicz, A. A., Skowerski, K., Trzaskowski, B., Kajetanowicz, A., & Grela, K. (2019).
ACS Omega, 4(1), 1831-1837
Ruthenium-Catalysed Olefin Metathesis in Environmentally Friendly Solvents: 2-Methyltetrahydrofuran Case Revisited
Smoleń, M., Marczyk, A., Kośnik, W., Trzaskowski, B., Kajetanowicz, A., & Grela, K. (2019).
European Journal of Organic Chemistry, 2019(4), 640-646
Specialized Ruthenium Olefin Metathesis Catalysts Bearing Bulky Unsymmetrical NHC Ligands: Computations, Synthesis and Application
Małecki, P., Gajda, K., Gajda, R., Woźniak, K., Trzaskowski, B., Kajetanowicz, A., & Grela, K. (2019).
ACS Catalysis, 9(1), 587-598
Carbon aerogels prepared by autocondensation of flavonoid tannin
Szczurek, A., Fierro, V., Medjahdi, G., & Celzard, A. (2019).
Carbon Resources Conversion, 2(1), 72-84
A novel de novo mutation p.Ala428Asp in KRT5 gene as a cause of localized epidermolysis bullosa simplex
Stawczyk-Macieja, M., Wertheim-Tysarowska, K., Jakubowski, R., Szczerkowska-Dobosz, A., Krygier, M., Wilkowska, A., . . . & Nowicki, R. (2019).
Experimental Dermatology
Thermodynamics of the fourU RNA thermal switch derived from molecular dynamics simulations and spectroscopic techniques
Leonarski, F., Jasiński, M., & Trylska, J. (2019).
Biochimie, 156, 22-32
Enzyme kinetics in crowded solutions from isothermal titration calorimetry
Maximova, K., Wojtczak, J., & Trylska, J. (2019).
Analytical Biochemistry, 567, 96-105
Monitoring hydrogenation reactions using benchtop 2D NMR with extraordinary sensitivity and spectral resolution
Gołowicz, D., Kazimierczuk, K., Urbańczyk, M., & Ratajczyk, T. (2019).
ChemistryOpen, 8(2), 196-200
TReNDS-Software for reaction monitoring with time-resolved non-uniform sampling
Urbańczyk, M., Shchukina, A., Gołowicz, D., & Kazimierczuk, K. (2019).
Magnetic Resonance in Chemistry, 57(1), 4-12.
Unequal misses during the flash-induced advancement of photosystem II: effects of the S-state and acceptor side cycles
Pham, L. V., Olmos, J. D., Chernev, P., Kargul, J., & Messinger, J. (2019).
Photosynthesis Research, 139(1-3), 93-106
DeepCoil – a fast and accurate prediction of coiled-coil domains in protein sequences
Ludwiczak, J., Winski, A., Szczepaniak, K., Alva, V., & Dunin-Horkawicz, S. (2019).
Bioinformatics
RRMdb-an evolutionary-oriented database of RNA recognition motif sequences
Nowacka, M., Boccaletto, P., Jankowska, E., Jarzynka, T., Bujnicki, J. M., & Dunin-Horkawicz, S. (2019).
Database, 2019
GENCODE reference annotation for the human and mouse genomes
Frankish, A., Diekhans, M., Ferreira, A., Johnson, R., ... & Uszczynska-Ratajczak, B. (2019).
Nucleic Acids Research, 47(D1), D766-D773
Upregulation of MLK4 promotes migratory and invasive potential of breast cancer cells
Marusiak, A. A., Prelowska, M. K., Mehlich, D., Lazniewski, M., Kaminska, K., Gorczynski, A., . . . & Nowis, D. (2019).
Oncogene, 38(15), 2860-2875.
Mixture of Forward-Directed and Backward-Directed Autoregressive Hidden Markov Models for Time Series Modeling.
Tabar, V. R., Fathipour, H., Pérez-Sánchez, H., Eskandari, F., and Plewczynski, D. (2019).
Journal of The Iranian Statistical Society
Learning directed acyclic graphs by determination of candidate causes for discrete variables.
Tabar, V. R., Zareifard, H., Salimi, S., & Plewczynski, D. (2019).
Journal of Statistical Computation and Simulation, 1-14.
Organocatalytic Group Transfer Reactions with Hypervalent Iodine Reagents
Ghosh, M. K., Rajkiewicz, A. A., & Kalek, M. (2019).
Synthesis, 51(02), 359-370.
The photocatalytic activity of rutile and anatase TiO2 electrodes modified with plasmonic metal nanoparticles followed by photoelectrochemical measurements
Krysiak, O. A., Barczuk, P. J., Bienkowski, K., Wojciechowski, T., Augustynski, J. (2019).
Catalysis Today, 321-322, 52-58
Inhibition of Escherichia coli Growth by Vitamin B 12 –Peptide Nucleic Acid Conjugates
Rownicki, M., Dabrowska, Z., Wojciechowska, M., Wierzba, A. J., Maximova, K., Gryko, D., Trylska, J. (2019).
ACS Omega, 4(1), 819-824
Pigeon odor varies with experimental exposure to trace metal pollution
Leclaire, S. Chatelain, M. Pessato, A. Buatois, B. Frantz, A. Gasparini, J. (2019).
Ecotoxicology, 28(1), 76-85
Testate Amoebae in the 407-Million-Year-Old Rhynie Chert
Strullu-Derrien, C. Kenrick, P. Goral, T. Knoll, A. H. (2019).
Current Biology, 29(3), 461-467.e2.
Birds with high lifetime reproductive success experience increased telomere loss.
Sudyka, J., Arct, A., Drobniak, S. M., Gustafsson, L., & Cichoń, M. (2019).
Biology Letters, 15(1), 20180637.
Sex-specific effects of parasites on telomere dynamics in a short-lived passerine – the blue tit.
Sudyka, J., Podmokła, E., Drobniak, S. M., Dubiec, A., Arct, A., Gustafsson, L., & Cichoń, M. (2019).
The Science of Nature, 106(1-2), 6.
Novel calcineurin A (PPP3CA) variant associated with epilepsy, constitutive enzyme activation and downregulation of protein expression
Rydzanicz, M., Wachowska, M., Cook, E. C., Lisowski, P., Kuźniewska, B., Szymańska, K., ... & Koppolu, A. (2018).
European Journal of Human Genetics, 27, 61-69.