Analysis of Structural Chromosome Variants by Next Generation Sequencing Methods
Plewczynski, D., Gruca, S., Szałaj, P., Gulik, K., Oliveira, S. F., & Malhotra, A.
Clinical Applications for Next-Generation Sequencing, 39-61.
Nanomedicine: Application of nanoparticles in clinical therapies and diagnostics
Kargul, J., Irminger-Finger, I., & Laurent, G. J.
The International Journal of Biochemistry & Cell Biology, 75, 140.
miR-132 Regulates Dendritic Spine Structure by Direct Targeting of Matrix Metalloproteinase 9 mRNA
Jasińska, M., Miłek, J., Cymerman, I. A., Łęski, S., Kaczmarek, L., & Dziembowska, M.
Molecular Neurobiology, 53(7), 4701-4712.
G protein–coupled receptors (GPCRs): The more the merrier
Iminger-Finger, I., Kargul, J., & Laurent, G. J.
The International Journal of Biochemistry & Cell Biology, 77, 181-182.
Topographically Flat Nanoplasmonic Sensor Chips for Biosensing and Materials Science.
Nugroho, F. A. A., Frost, R., Antosiewicz, T. J., Fritzsche, J., Larsson Langhammer, E. M., & Langhammer, C. (2016).
ACS sensors, 2(1), 119-127.
Geodesic arenes
Trzaskowski, B., Ostrowska, K., & Adamowicz, L. (2016).
Carbon Nanomaterials Sourcebook: Nanoparticles, Nanocapsules, Nanofibers, Nanoporous Structures, and Nanocomposites (pp. 115-139). CRC Press.
Highly Efficient and Stable Solar Water Splitting at (Na) WO3 Photoanodes in Acidic Electrolyte Assisted by Non‐Noble Metal Oxygen Evolution Catalyst.
Sarnowska, M., Bienkowski, K., Barczuk, P. J., Solarska, R., & Augustynski, J. (2016).
Advanced Energy Materials, 6(14), 1600526.
Computational Approach to Dendritic Spine Taxonomy and Shape Transition Analysis
Bokota, G., Magnowska, M., Kuśmierczyk, T., Łukasik, M., Roszkowska, M., & Plewczynski, D. (2016)
Frontiers in computational neuroscience, 10, 140
3DFlu: database of sequence and structural variability of the influenza hemagglutinin at population scale
Mazzocco, G., Lazniewski, M., Migdał, P., Szczepińska, T., Radomski, J. P., & Plewczynski, D.
Database, 2016, baw130
Retreat and extinction of the Late Pleistocene cave bear (Ursus spelaeus sensu lato)
Baca, M., Popović, D., Stefaniak, K., Marciszak, A., Urbanowski, M., Nadachowski, A., & Mackiewicz, P. (2016)
The Science of Nature, 103(11-12), 92.
In search of functional advantages of knots in proteins
Dabrowski-Tumanski, P., Stasiak, A., & Sulkowska, J. I. (2016)
PloS one, 11(11), e0165986.
Complex lasso: new entangled motifs in proteins
Niemyska, W., Dabrowski-Tumanski, P., Kadlof, M., Haglund, E., Sułkowski, P., & Sulkowska, J. I. (2016)
Scientific reports, 6, 36895.
Kinetic and solvent isotope effects on biotransformation of aromatic amino acids and their derivatives
Kańska, M., Jemielity, J., Pająk, M., Pałka, K., Podsadni, K., & Winnicka, E. (2016)
Journal of Labelled Compounds and Radiopharmaceuticals, 59(14), 627-634.
Synthetic Capped mRNAs for Cap-Specific Photo-Cross-Linking Experiments
Kowalska, J., Martin, F., & Jemielity, J. (2016).
Synthetic mRNA: Production, Introduction Into Cells, and Physiological Consequences, 31-43.
Genome-wide co-localization of active EGFR and downstream ERK pathway kinases mirrors mitogen-inducible RNA polymerase 2 genomic occupancy
Mikula, M., Skrzypczak, M., Goryca, K., Paczkowska, K., Ledwon, J. K., Statkiewicz, M., ... & Karczmarski, J. (2016).
Nucleic acids research, 44(21), 10150-10164.
Towards engineering novel PE-based immunotoxins by targeting them to the nucleus
Borowiec, M., Gorzkiewicz, M., Grzesik, J., Walczak-Drzewiecka, A., Salkowska, A., Rodakowska, E., ... & Ginalski, K. (2016).
Toxins, 8(11), 321.
Effect of In-CNHC bonds on the synthesis, structure, and reactivity of dialkylindium alkoxides: How indium compares to gallium
Cybularczyk, M., Dranka, M., Zachara, J., & Horeglad, P. (2016)
Organometallics, 35(19), 3311-3322
Roadmap on optical metamaterials
Urbas, A. M., Jacob, Z., Dal Negro, L., Engheta, N., Boardman, A. D., Egan, P., ... & DeVault, C. (2016)
Journal of Optics, 18(9), 093005
Single Particle Nanoplasmonic Sensing in Individual Nanofluidic Channels
Zengin, G., Gschneidtner, T., Verre, R., Shao, L., Antosiewicz, T. J., Moth-Poulsen, K., ... & Shegai, T. (2016).
The Journal of Physical Chemistry C, 120(37), 20588-20596.
Evaluating Conditions for Strong Coupling between Nanoparticle Plasmons and Organic Dyes Using Scattering and Absorption Spectroscopy
Zengin, G., Gschneidtner, T., Verre, R., Shao, L., Antosiewicz, T. J., Moth-Poulsen, K., ... & Shegai, T. (2016).
The Journal of Physical Chemistry C, 120(37), 20588-20596.
Role of material loss and mode volume of plasmonic nanocavities for strong plasmon-exciton interactions
Yang, Z. J., Antosiewicz, T. J., & Shegai, T. (2016).
Optics express, 24(18), 20373-20381.
Comment to “Pressure-induced structural and valence transition in AgO” by C. Hou, J. Botana, X. Zhang, X. Wang, and M. Miao
Derzsi, M., & Grochala, W. (2016).
Physical Chemistry Chemical Physics, 18(46), 31973-31974.
Ag2S2O8 meets AgSO4: the second example of metal-ligand redox isomerism among inorganic systems
Gilewski, T. E., Leszczyński, P. J., Budzianowski, A., Mazej, Z., Grzelak, A., Jaroń, T., & Grochala, W. (2016).
Dalton Transactions, 45(45), 18202-18207.
Organic derivatives of Mg(BH4)2 as precursors towards MgB2 and novel inorganic mixed-cation borohydrides
Wegner, W., Jaroń, T., Dobrowolski, M. A., Cyrański, M. K., & Grochala, W. (2016).
Dalton Transactions, 45(36), 14370-14377.
Synthesis, crystal structures, and selected properties of metal fluorosulphates(VI)
Michałowski, T., Malinowski, P. J., & Grochala, W. (2016).
Journal of Fluorine Chemistry, 189, 102-118.
Mono- and Bimetalic Amidoboranes
Owarzany, R., Leszczyński, P. J., Fijalkowski, K. J., & Grochala, W. (2016).
Crystals, 6(8), 88.
Proteolytic degradation pathways in health and disease
Kargul, J., Irminger-Finger, I., & Laurent, G. J. (2016).
International Journal of Biochemistry and Cell Biology, (79), 401
Crystal, electronic, and magentic structures of M2AgF4 (M=Na-Cs) phases as viewed from the DFT+U method
Kurzydłowski, D., Derzsi, M., Mazej, Z., & Grochala, W. (2016).
Dalton Transactions, 45(41), 16255-16261.
Local and cooperative Jahn-Teller effect and resultant magnetic properties of M2AgF4 (M=Na-Cs) phases
Kurzydłowski, D., Jaroń, T., Ozarowski, A., Hill, S., Jagličić, Z., Filinchuk, Y., ... & Grochala, W. (2016).
Properties of M2AgF4 (M= Na–Cs) Phases. Inorganic chemistry, 55(21), 11479-11489.
Hexacoordinated nitrogen(V) stabilized by high pressure
Kurzydłowski, D., & Zaleski-Ejgierd, P. (2016).
Scientific reports, 6, 36049.
Rapid and safe ASAP acquisition with EXACT NMR
Ndukwe, I. E., Shchukina, A., Kazimierczuk, K., & Butts, C. P. (2016)
Chemical Communications, 52(86), 12769-12772.
Depth of formation of CaSiO3 – walstromite included in super-deep diamonds
Anzolini, C., Angel, R. J., Merlini, M., Derzsi, M., Tokár, K., Milani, S., ... & Harris, J. W. (2016).
Lithos, 265, 138-147.
Methyl Transfer by Substrate Signaling from a Knotted Protein Fold
Christian, T., Sakaguchi, R., Perlinska, A. P., Lahoud, G., Ito, T., Taylor, E. A., ... & Hou, Y. M. (2016).
https://www.nature.com/articles/nsmb.3282
Complexity curve: a graphical measure of data complexity and classifier performance
Zubek, J., & Plewczynski, D. M. (2016).
PeerJ Computer Science, 2, e76.
Chemically driven strong negative linear compressibility in sodium amidoboraneNa, (NH 2 BH 3).
Magos-Palasyuk, E., Fijalkowski, K. J., & Palasyuk, T. (2016).
Scientific reports, 6, 28745.
Solvent Fluctuations Induce Non-Markovian Kinetics in Hydrophobic Pocket-Ligand Binding
Weiß, R. G., Setny, P., & Dzubiella, J. (2016).
The Journal of Physical Chemistry B, 120(33), 8127-8136.
Effects of Spatially-Dependent Mobilities on the Kinetics of the Diffusion-Controlled Association Derived from the First Passage Time Approach
Długosz, M., & Antosiewicz, J. M. (2016).
The Journal of Physical Chemistry B, 120(29), 7114-7127.
Inter- and intraspecific variation in the surface pattern of the dermal bones of two sturgeon species.
Thieren, E., Ottoni, C., Popović, D., & Van Neer, W. (2016).
Journal of applied ichthyology, 32(4), 609-628.
Hoveyda-Grubbs complexes with boryl anions are predicted to be fast metathesis catalysts
Trzaskowski, B., & Grela, K. (2016).
Catalysis Communications, 86, 133-138.
2dSpAn: Semiautomated 2-d segmentation, classification and analysis of hippocampal dendritic spine plasticity
Basu, S., Plewczynski, D., Saha, S., Roszkowska, M., Magnowska, M., Baczynska, E., & Wlodarczyk, J. (2016).
Bioinformatics, 32(16), 2490-2498.
Synthetic m3G-CAP attachment necessitates a minimum trinucleotide constituent to be recognised as a Nuclear Import Signal
Honcharenko, M., Bestas, B., Jezowska, M., Wojtczak, B. A., Moreno, P. M. D., Romanowska, J., ... & Strömberg, R. (2016).
RSC Advances, 6(56), 51367-51373.
Unfolding the mechanism of the AAA+ unfoldase VAT by a combined cryo-EM, solution NMR study
Huang, R., Ripstein, Z. A., Augustyniak, R., Lazniewski, M., Ginalski, K., Kay, L. E., & Rubinstein, J. L. (2016).
Proceedings of the National Academy of Sciences, 113(29), E4190-E4199.
A multiscale approach to modeling plasmonic nanorod biosensors
Antosiewicz, T. J., & Käll, M. (2016).
The Journal of Physical Chemistry C, 120(37), 20692-20701.
Artifacts in time-resolved NUS: A case study of NOE buil-up curves from 2D NOESY
Dass, R., Kasprzak, P., Koźmiński, W., & Kazimierczuk, K. (2016).
Journal of Magnetic Resonance, 265, 108-116.
Sadlej Conformational space of clindamycin studied by ab inito and full-atom molecular dynamics.
Kulczycka-Mierzejewska, K., Trylska, J., & Sadlej, J. (2016).
Journal of molecular modeling, 22(1), 20.
Canted Antiferromagnetism in Two-Dimensional Silver (II) Bis [pentafluoridooxidotungstate (VI)].
Mazej, Z., Gilewski, T., Goreshnik, E. A., Jagličić, Z., Derzsi, M., & Grochala, W. (2016).
Inorganic chemistry, 56(1), 224-233.
Structural and energetic comparison of the complexes of aminoglycosides with the model of the ribosomal A-site.
Kulik, M., & Trylska, J. (2016).
RAIRO-Operations Research, 50(2), 375-386.
Conformational space of clindamycin studied by quantum and full-atom molecular dynamics-Supplementary Material.
Kulczycka-Mierzejewska, K., Trylska, J., & Sadlej, J. (2016).
Journal of Molecular Modeling,22:20
Scanning of 16S ribosomal RNA for peptide nucleic acid targets
Górska, A., Markowska-Zagrajek, A., Równicki, M., & Trylska, J. (2016).
The Journal of Physical Chemistry B, 120(33), 8369-8378.
Interactions of aminoglycoside antibiotics with rRNA.
Trylska, J., & Kulik, M. (2016).
Biochemical Society Transactions, 44(4), 987-993.
Controlling the stereoselectivity of rac-LA polymerization by chiral recognition induced the formation of homochiral dimeric metal alkoxides.
Horeglad, P., Cybularczyk, M., Litwińska, A., Dąbrowska, A. M., Dranka, M., Żukowska, G. Z., M. Urbańczyk & Michalak, M. (2016)
Polymer Chemistry, 7(11), 2022-2036.
Effect of In–CNHC Bonds on the Synthesis, Structure, and Reactivity of Dialkylindium Alkoxides: How Indium Compares to Gallium.
Cybularczyk, M., Dranka, M., Zachara, J., & Horeglad, P. (2016).
Organometallics, 35(19), 3311-3322.
Elucidation of Mechanisms and Selectivities of Metal-Catalyzed Reactions Using Quantum Chemical Methodology
Santoro, S., Kalek, M., Huang, G., & Himo, F. (2016)
Accounts of Chemical Research, 49(5), 1006-1018.
Lgr5 marks neural crest derived multipotent oral stromal stem cells.
Boddupally, K., Wang, G., Chen, Y., & Kobielak, A. (2016)
Stem cells, 34(3), 720-731.
Efficient assessment of developmental, surgical and pathological lymphangiogenesis using a lymphatic reporter mouse and its embryonic stem cells.
Hong, M., Jung, E., Yang, S., Jung, W., Seong, Y.J., Park, E., Bramos, A., Kim, K.E., Lee, S., Daghlian, G. and Seo, J.I., (2016)
PloS one, 11(6), e0157126.
3D-GNOME: an integrated web service for structural modeling of the 3D genome.
Szalaj, P., Michalski, P. J., Wróblewski, P., Tang, Z., Kadlof, M., Mazzocco, G., ... & Plewczynski, D. (2016).
Nucleic acids research, 44(W1), W288-W293.
An integrated 3-dimensional genome modeling engine for data-driven simulation of spatial genome organization.
Szałaj, P., Tang, Z., Michalski, P., Pietal, M. J., Luo, O. J., Sadowski, M., ... & Plewczynski, D. (2016).
Genome research, 26(12), 1697-1709.
Efficient Electrosynthesis of AgIISO4: A Powerful Oxidizer and Narrow Band Gap Semiconductor.
Połczyński, P., Gilewski, T.E., Gawraczyński, J., Derzsi, M., Leszczyński, P.J., Gadomski, W., Mazej, Z., Jurczakowski, R. and Grochala, W., (2016).
European Journal of Inorganic Chemistry, 2016(35), pp.5401-5404.
Mediterranean blue tits as a case study of local adaptation.
Charmantier, A., Doutrelant, C., Dubuc‐Messier, G., Fargevieille, A., & Szulkin, M. (2016).
Evolutionary Applications 9:135-152.
Population genomic footprints of fine-scale differentiation between habitats in Mediterranean blue tits.
Szulkin M., Gagnaire P.-A., Bierne N. & Charmantier A. (2016)
Molecular Ecology 25:542-558.
Molecular anatomy of the thalamic complex and the underlying transcription factors.
Nagalski, A., Puelles, L., Dabrowski, M., Wegierski, T., Kuznicki, J., & Wisniewska, M. B. (2016).
Brain Structure and Function, 221(5), 2493-2510.
Structural and energetic comparison of the complexes of aminoglycosides with the model of the ribosomal A-site
Kulik, M., & Trylska, J. (2016).
RAIRO-Operations Research, 50(2), 375-386.
Mechanisms in endocrinology: MicroRNA in diagnostics and therapy of thyroid cancer
Wójcicka, A., Kolanowska, M., & Jażdżewski, K. (2016)
European journal of endocrinology, 174(3), R89-R98
Introgression of peled (Coregonus peled) into European whitefish (C. lavaretus) in Poland
Popović, D., Szczepkowski, M., Heese, T., & Weglenski, P. (2016)
Conservation genetics, 17(2), 503-508
The proline-rich region of glyceraldehyde-3-phosphate dehydrogenase from human sperm may bind SH3 domains, as revealed by a bioinformatic study of low-complexity protein segments
Tatjewski, M., Gruca, A., Plewczynski, D., & Grynberg, M. (2016)
Molecular reproduction and development, 83(2), 144-148
Complete series of alkali metal M(BH3NH2BH2NH2BH3) hydrogen stores accessed via metathesis in organic solvents
Owarzany, R., Fijalkowski, K. J., Jaroń, T., Leszczyński, P. J., Dobrzycki, Ł., Cyrański, M. K., & Grochala, W.
Inorganic chemistry, 55(1), 37-45
Vitamin B12 suitably tailored for disulfide-based conjugation
Wierzba, A., Wojciechowska, M., Trylska, J., & Gryko, D. (2016).
Bioconjugate chemistry, 27(1), 189-197
Conformational space of clindamycin studied by quantum and full-atom molecular dynamics
K. Kulczycka-Mierzejewska, J. Trylska, J. Sadlej.
Journal of Molecular Modeling 2016, 22(20): 1-11
Two-headed tetraphosphate cap analogs are inhibitors of the Dcp1/2 RNA decapping complex
Ziemniak, M., Mugridge, J. S., Kowalska, J., Rhoads, R. E., Gross, J. D., & Jemielity, J. (2016)
RNA, 22(4), 518-529
Controlling the stereoselectivity of rac-LA polymerization by chiral recognition induced formation of homochiral dimeric metal alkoxides
Horeglad, P., Cybularczyk, M., Litwińska, A., Dąbrowska, A. M., Dranka, M., Żukowska, G. Z., ... & Michalak, M. (2016)
Polymer Chemistry, 7(11), 2022-2036.
Molecular recognition of mRNA 5′ cap by 3′ poly(A)-specific ribonuclease (PARN) differs from interactions known for other cap-binding proteins
Niedzwiecka, A., Nilsson, P., Worch, R., Stepinski, J., Darzynkiewicz, E., & Virtanen, A. (2016)
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics, 1864(4), 331-345
Interferon γ (IFNγ)-Signaling via mTORC2 and Regulatory Effects in the Generation of Type II IFN Biological Responses
Kroczynska, B., Rafidi, R. L., Majchrzak-Kita, B., Kosciuczuk, E. M., Blyth, G. T., Jemielity, J., ... & Fish, E. N. (2016)
Journal of Biological Chemistry, jbc-M115
Detecting reliable non interacting proteins (NIPs) significantly enhancing the computational prediction of protein-protein interactions using machine learning methods
Srivastava, A., Mazzocco, G., Kel, A., Wyrwicz, L. S., & Plewczynski, D.
Molecular BioSystems, 12(3), 778-785
Synthesis and structural study of a self-organized MnTiO3-TiO2 eutectic
Kolodziejak, K., Gajc, M., Sar, J., Diduszko, R., Rozniatowski, K., & Pawlak, D. A. (2016)
Journal of Alloys and Compounds, 659, 152-158
Fluorescent HTS assay for phosphohydrolases based on nucleoside 5ʹ-fluorophosphates: application in screening for inhibitors of mRNA Decapping Scavenger and PDE-I
Baranowski, M. R., Nowicka, A., Jemielity, J., & Kowalska, J. (2016)
Organic & biomolecular chemistry, 14(20), 4595-4604
Clickable trimethylguanosine cap analogs modified within the triphosphate bridge: synthesis, conjugation to RNA and susceptibility to degradation
Wojtczak, B. A., Warminski, M., Kowalska, J., Lukaszewicz, M., Honcharenko, M., Smith, C. E., ... & Jemielity, J. (2016)
RSC Advances, 6(10), 8317-8328
The diagnosis of nonclassic congenital adrenal hyperplasia due to 21-hydroxylase deficiency, based on serum basal or post-ACTH stimulation 17-hydroxyprogesterone, can lead to false-positive diagnosis
Ambroziak, U., Kępczyńska‐Nyk, A., Kuryłowicz, A., Małunowicz, E. M., Wójcicka, A., Miśkiewicz, P., & Macech, M. (2016)
Clinical endocrinology, 84(1), 23-29
Plasmon resonance-enhanced photoelectrodes and photocatalysts
Augustynski, J., Bienkowski, K., & Solarska, R. (2016)
Coordination Chemistry Reviews, 325, 116-124.
Acetylpyrene-labelled 7-methylguanine nucleotides: unusual fluorescence properties and application to decapping scavenger activity monitoring.
Kasprzyk, R., Kowalska, J., Wieczorek, Z., Szabelski, M., Stolarski, R., & Jemielity, J. (2016).
Organic & biomolecular chemistry 14, no. 16 (2016): 3863-3868.
Amino acid recognition for automatic resonance assignment of intrinsically disordered proteins
Piai, A., Gonnelli, L., Felli, I. C., Pierattelli, R., Kazimierczuk, K., Grudziąż, K., ... & Zawadzka-Kazimierczuk, A. (2016)
Journal of biomolecular NMR, 64(3), 239-253
Artifacts in time-resolved NUS: A case study of NOE build-up curves from 2D NOESY
Dass, R., Kasprzak, P., Koźmiński, W., & Kazimierczuk, K.
Journal of Magnetic Resonance, 265, 108-116
AuO: Evolving from Dis-to Comproportionation and Back Again.
Hermann, A., Derzsi, M., Grochala, W., & Hoffmann, R. (2016).
nic chemistry 55, no. 3 (2016): 1278-1286.
Ferromagnetic ground state for a hypothetical iron-based extended metal atom chain.
Szarek, P., Wegner, W., & Grochala, W. (2016).
Journal of molecular modeling, 22(3), 63.
Unique silver (II) fluorides: the emerging electronic and magnetic materials.
Mazej, Z., Kurzydłowski, D., & Grochala, W. (2016).
Photonic and Electronic Properties of Fluoride Materials (pp. 231-260).
Highly Efficient and Stable Solar Water Splitting at (Na) WO3 Photoanodes in Acidic Electrolyte Assisted by Non‐Noble Metal Oxygen Evolution Catalyst.
Sarnowska, M., Bienkowski, K., Barczuk, P. J., Solarska, R., & Augustynski, J. (2016).
Advanced Energy Materials, 6(14).
Solar-driven water oxidation and decoupled hydrogen production mediated by an electron-coupled-proton buffer
Bloor, L. G., Solarska, R., Bienkowski, K., Kulesza, P. J., Augustynski, J., Symes, M. D., & Cronin, L. (2016).
Journal of the American Chemical Society, 138(21), 6707-6710.
“Introgression of peled (Coregonuspeled) into European whitefish (C. lavaretus) in Poland.”
Popović, Danijela, Miroslaw Szczepkowski, Tomasz Heese, and Piotr Weglenski.
Conservation genetics 17, no. 2 (2016): 503-508.
“Geodesic arenes”
Trzaskowski Bartosz, Ostrowska Kinga, and Adamowicz Ludwik
Carbon Nanomaterials Sourcebook: Nanoparticles, Nanocapsules, Nanofibers, Nanoporous Structures and Nanocomposites, CRC Press 2016
Effects of Spatially Dependent Mobilities on the Kinetics of the Diffusion-Controlled Association Derived from the First-Passage-Time Approach.
Długosz, M., & Antosiewicz, J. M. (2016).
The Journal of Physical Chemistry B, 120(29), 7114-7127.
“Synthetic m 3 G-CAP attachment necessitates a minimum trinucleotide constituent to be recognised as a nuclear import signal.”
Honcharenko, M., B. Bestas, M. Jezowska, B. A. Wojtczak, P. M. D. Moreno, J. Romanowska, S. M. Bächle et al.
RSC Advances 6, no. 56 (2016): 51367-51373.
FAM46 proteins are novel eukaryotic non-canonical poly (A) polymerases.
Kuchta, K., Muszewska, A., Knizewski, L., Steczkiewicz, K., Wyrwicz, L. S., Pawlowski, K., ... & Ginalski, K. (2016).
Nucleic acids research 44, no. 8 (2016): 3534-3548.
MEK Inhibition Sensitizes Precursor B-Cell Acute Lymphoblastic Leukemia (B-ALL) Cells to Dexamethasone through Modulation of mTOR Activity and Stimulation of Autophagy.
Polak, A., Kiliszek, P., Sewastianik, T., Szydłowski, M., Jabłońska, E., Białopiotrowicz, E., ... & Prochorec-Sobieszek, M. (2016)
PloS one, 11(5), e0155893.
Family of microRNA-146 regulates RARβ in papillary thyroid carcinoma.
Czajka, A. A., Wójcicka, A., Kubiak, A., Kotlarek, M., Bakuła-Zalewska, E., Koperski, Ł., ... & Jażdżewski, K. (2016).
PloS one, 11(3), e0151968.
Monitoring polydispersity by NMR diffusometry with tailored norm regularisation and moving-frame processing.
Urbańczyk, M., Bernin, D., Czuroń, A., & Kazimierczuk, K. (2016).
Analyst, 141(5), 1745-1752.
Diffuse Surface Scattering and Quantum Size Effects in the Surface Plasmon Resonances of Low-Carrier-Density Nanocrystals.
Monreal, R. C., Antosiewicz, T. J., & Apell, S. P. (2016).
The Journal of Physical Chemistry C 120, no. 9 (2016): 5074-5082.
PDP-CON: prediction of domain/linker residues in protein sequences using a consensus approach.
Chatterjee, P., Basu, S., Zubek, J., Kundu, M., Nasipuri, M., & Plewczynski, D. (2016).
Journal of molecular modeling, 22(4), 72. Chicago
Computational inference of H3K4me3 and H3K27ac domain length.
Zubek, Julian, Michael L. Stitzel, Duygu Ucar, and Dariusz M. Plewczynski., (2016)
PeerJ 4: e1750
A Novel Method for Gene-Specific Enhancement of Protein Translation by Targeting 5’UTRs of Selected Tumor Suppressors.
Master, A., Wójcicka, A., Giżewska, K., Popławski, P., Williams, G. R., & Nauman, A. (2016).
PloS one 11, no. 5 (2016): e0155359.
Synchronous genetic turnovers across Western Eurasia in Late Pleistocene collared lemmings.
Palkopoulou, E., Baca, M., Abramson, N. I., Sablin, M., Socha, P., Nadachowski, A., ... & Weglenski, P. (2016).
Global change biology, 22(5), 1710-1721.
High-pressure stabilization of argon fluorides.
Kurzydłowski, D., & Zaleski-Ejgierd, P. (2016).
Physical Chemistry Chemical Physics, 18(4), 2309-2313.
“Efficient assessment of developmental, surgical and pathological lymphangiogenesis using a lymphatic reporter mouse and its embryonic stem cells.”
Hong, Mingu, Eunson Jung, Sara Yang, Wonhyuek Jung, Young Jin Seong, Eunkyung Park, Athanasios Bramos et al.
PloS one 11, no. 6 (2016): e0157126.
Histone H1 variants in Arabidopsis are subject to numerous post-translational modifications, both conserved and previously unknown in histones, suggesting complex functions of H1 in plants.
Kotliński, M., Rutowicz, K., Kniżewski, Ł., Palusiński, A., Olędzki, J., Fogtman, A., ... & Jerzmanowski, A. (2016).
PloS one, 11(1), e0147908.
Diverse cap-binding properties of Drosophila eIF4E isoforms.
Zuberek, J., Kuchta, K., Hernández, G., Sonenberg, N., & Ginalski, K. (2016).
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics, 1864(10), 1292-1303.
Chemically driven negative linear compressibility in sodium amidoborane, Na (NH2BH3).
Magos-Palasyuk, E., Fijalkowski, K.J. and Palasyuk, T., 2016.
Scientific reports, 6, p.28745.
Structural properties and the fluorite–pyrochlore phase transition in La 2 Zr 2 O 7: the role of oxygen to induce local disordered states.
Paul, B., Singh, K., Jaroń, T., Roy, A. and Chowdhury, A., (2016).
Journal of Alloys and Compounds, 686, pp.130-136.
EXtended ACquisition Time (EXACT) NMR—A Case for′ Burst′ Non‐Uniform Sampling.
Ndukwe, I. E., Shchukina, A., Kazimierczuk, K., Cobas, C., & Butts, C. P. (2016).
ChemPhysChem, 17(18), 2799-2803.
Coordination Chemistry of Diiodine and Implications for the Oxidation Capacity of the Synergistic Ag+/X2 (X= Cl, Br, I) System.
Malinowski, P. J., Himmel, D., & Krossing, I. (2016).
Angewandte Chemie International Edition, 55(32), 9262-9266.
“Computational study on donor–acceptor optical markers for Alzheimer’s disease: a game of charge transfer and electron delocalization.”
Peccati, Francesca, Marta Wiśniewska, Xavier Solans-Monfort, and Mariona Sodupe
Physical Chemistry Chemical Physics 18, no. 17 (2016): 11634-11643
LassoProt: server to analyze biopolymers with lassos.
Dabrowski-Tumanski, P., Niemyska, W., Pasznik, P., & Sulkowska, J. I. (2016).
Nucleic acids research, 44(W1), W383-W389.
Cap analogs modified with 1, 2-dithiodiphosphate moiety protect mRNA from decapping and enhance its translational potential.
Strenkowska, M., Grzela, R., Majewski, M., Wnek, K., Kowalska, J., Lukaszewicz, M., ... & Jemielity, J. (2016).
Nucleic acids research, 44(20), 9578-9590.
Structural basis of mRNA-cap recognition by Dcp1-Dcp2.
Mugridge, J. S., Ziemniak, M., Jemielity, J., & Gross, J. D. (2016).
Nature Structural and Molecular Biology, 23(11), 987.
“Backbone Assignment of the MALT1 Paracaspase by Solution NMR.”
Unnerståle, Sofia, Michal Nowakowski, Vera Baraznenok, Gun Stenberg, Jimmy Lindberg, Maxim Mayzel, Vladislav Orekhov, and Tatiana Agback
PloS one 11, no. 1 (2016): e0146496.
Metabolic pathways in the periphery and brain: Contribution to mental disorders?
Nagalski, A., Kozinski, K., & Wisniewska, M. B. (2016).
The international journal of biochemistry & cell biology, 80, 19-30.
Observation of mode splitting in photoluminescence of individual plasmonic nanoparticles strongly coupled to molecular excitons
Wersäll, M., Cuadra, J., Antosiewicz, T. J., Balci, S., & Shegai, T. (2016)
Nano letters, 17(1), 551-558
Cap analogs modified with 1,2-dithiodiphosphate moiety protect mRNA from decapping and enhance its translational potential
Strenkowska, M., Grzela, R., Majewski, M., Wnek, K., Kowalska, J., Lukaszewicz, M., ... & Jemielity, J. (2016).
Nucleic acids research, 44(20), 9578-9590
A novel route for preparing 5′ cap mimics and capped RNAs: phosphate-modified cap analogues obtained via click chemistry
Walczak, S., Nowicka, A., Kubacka, D., Fac, K., Wanat, P., Mroczek, S., ... & Jemielity, J.
Chemical Science, 8(1), 260-267
Structural basis of mRNA-cap recognition by Dcp1–Dcp2
Mugridge, J. S., Ziemniak, M., Jemielity, J., & Gross, J. D.
Nature structural & molecular biology
Backbone assignment of the MALT1 Paracaspase by Solution NMR
Unnerståle, S., Nowakowski, M., Baraznenok, V., Stenberg, G., Lindberg, J., Mayzel, M., ... & Agback, T. (2016).
PloS one, 11(1), e0146496
Computational study on donor–acceptor optical markers for Alzheimer’s disease: a game of charge transfer and electron delocalization
Peccati, F., Wiśniewska, M., Solans-Monfort, X., & Sodupe, M. (2016).
Physical Chemistry Chemical Physics, 18(17), 11634-11643.
MaER: A New Ensemble Based Multiclass Classifier for Binding Activity Prediction of HLA Class II Proteins
Mazzocco, G., Bhowmick, S. S., Saha, I., Maulik, U., Bhattacharjee, D., & Plewczynski, D., (2016)
International Conference on Pattern Recognition and Machine Intelligence (pp. 462-471). Springer, Cham
Coordination Chemistry of Diiodine and Implications for the Oxidation Capacity of the Synergistic Ag+/X2 (X=Cl, Br, I) System
Malinowski, P. J., Himmel, D., & Krossing, I.
Angewandte Chemie International Edition, 55(32), 9262-9266
Silver Complexes of Dihalogen Molecules
Malinowski, P. J., Himmel, D., & Krossing, I.
Angewandte Chemie International Edition, 55(32), 9259-9261
Chemically driven strong negative linear compressibility in sodium amidoborane, Na(NH2BH3)
Magos-Palasyuk, E., Fijalkowski, K. J., & Palasyuk, T.
Scientific reports, 6, 28745
Inter – and intraspecific variation in the surface pattern of the dermal bones of two sturgeon species
Thieren, E., Ottoni, C., Popović, D., & Van Neer, W.
Journal of Applied Ichthyology, 32(4), 609-628
Structural properties and the fluorite–pyrochlore phase transition in La2Zr2O7: The role of oxygen to induce local disordered states
Paul, B., Singh, K., Jaroń, T., Roy, A., & Chowdhury, A.
Journal of Alloys and Compounds, 686, 130-136
Synthesis, biological activity and NMR-based structural studies of deltorphin I analogues modified in message domain with a new a,a-disubstituted glycines
Lasota, A., Frączak, O., Muchowska, A., Nowakowski, M., Maciejczyk, M., Ejchart, A., & Olma, A.
Chemical biology & drug design, 87(6), 824-832