CeNT
herb
Connecting the data landscape of long‐term ecological studies: The SPI‐Birds data hub
Culina, A., Adriaensen, F., Bailey, L. D., Burgess, M. D., Charmantier, A., Cole, E. F., ... & Visser, M. E.
Connected data landscape of long-term ecological studies: the SPI-Birds data hub
Non-Hematologic Toxicity of Bortezomib in Multiple Myeloma: The Neuromuscular and Cardiovascular Adverse Effects
Pancheri, E., Guglielmi, V., Wilczynski, G. M., Malatesta, M., Tonin, P., Tomelleri, G., ... & Vattemi, G.
Cancers, 12(9), 2540
Transport of nanoprobes in multicellular spheroids
Pilz, M., Kwapiszewska, K., Kalwarczyk, T., Bubak, G., Nowis, D., & Hołyst, R.
Nanoscale, 12(38), 19880-19887
Differential responses to kinase inhibition in FGFR2-addicted triple negative breast cancer cells: a quantitative phosphoproteomics study
Cunningham, D. L., Sarhan, A. R., Creese, A. J., Larkins, K. P., Zhao, H., Ferguson, H. R., ... & Heath, J. K.
Scientific reports, 10(1), 1-14
Immunoglobulin expression and the humoral immune response is regulated by the non-canonical poly(A) polymerase TENT5C
Bilska, A., Kusio-Kobiałka, M., Krawczyk, P. S., Gewartowska, O., Tarkowski, B., Kobyłecki, K., ... & Mroczek, S.
Nature communications, 11(1), 1-17
Systematic Evaluation of Chemically Distinct Tissue Optical Clearing Techniques in Murine Lymph Nodes
Matryba, P., Sosnowska, A., Wolny, A., Bozycki, L., Greig, A., Grzybowski, J., ... & Gołąb, J.
The Journal of Immunology, 204(5), 1395-1407
Bone marrow is the preferred site of memory CD4+ T cell proliferation during recovery from sepsis
Skirecki, T., Swacha, P., Hoser, G., Golab, J., Nowis, D., & Kozłowska, E.
JCI insight, 5(10)
Myeloid Cell-Derived Arginase in Cancer Immune Response
Grzywa, T. M., Sosnowska, A., Matryba, P., Rydzynska, Z., Jasinski, M., Nowis, D., & Golab, J.
Frontiers in immunology, 11, 938
The identity and methylation status of the first transcribed nucleotide in eukaryotic mRNA 5′ cap modulates protein expression in living cells
Sikorski, P. J., Warminski, M., Kubacka, D., Ratajczak, T., Nowis, D., Kowalska, J., & Jemielity, J.
Nucleic acids research, 48(4), 1607-1626
Arhgef5 Binds α-Dystrobrevin 1 and Regulates Neuromuscular Junction Integrity
Bernadzki, K. M., Daszczuk, P., Rojek, K. O., Pęziński, M., Gawor, M., Pradhan, B. S., ... & Niewiadomski, P.
Frontiers in Molecular Neuroscience, 13, 104
Building blocks for the chemistry of perfluorinated alkoxyaluminates [Al{OC(CF3)3}4]−: simplified preparation and characterization of Li+−Cs+, Ag+, NH4+, N2H5+ and N2H7+ salts
Malinowski, P. J., Jaroń, T., Domańska, M., Slattery, J. M., Schmitt, M., & Krossing, I.
Dalton Transactions, 49(23), 7766-7773
Completing the Triad: Synthesis and full Characterization of Homoleptic and Heteroleptic Carbonyl and Nitrosyl Complexes of the Group VI Metals
Bohnenberger, J., Schmitt, M., Feuerstein, W., Krummenacher, I., Butschke, B., Czajka, J., ... & Krossing, I.
Chemical Science, 11(14), 3592-3603
Long-Term Oral Administration of LLHK, LHK, and HK Alters Gene Expression Profile and Restores Age-Dependent Atrophy and Dysfunction of Rat Salivary Glands
Ishikawa, Y., Pieczonka, T. D., Bragiel-Pieczonka, A. M., Seta, H., Ohkuri, T., Sasanuma, Y., & Nonaka, Y.
Biomedicines, 8(2), 38
An Intrinsic Oscillation of Gene Networks Inside Hair Follicle Stem Cells: An Additional Layer That Can Modulate Hair Stem Cell Activities
Daszczuk, P., Mazurek, P., Pieczonka, T. D., Olczak, A., Boryń, Ł. M., & Kobielak, K.
Frontiers in Cell and Developmental Biology, 2020, 8, 1511
Cell-free DNA profiling in patients with lupus nephritis
Truszewska, A., Wirkowska, A., Gala, K., Truszewski, P., Krzemień-Ojak, Ł., Perkowska-Ptasińska, A., ... & Foroncewicz, B.
Lupus, 29(13), 1759-1772
hMTH1 and GPX1 expression in human thyroid tissue is interrelated to prevent oxidative DNA damage
Arczewska, K. D., Krasuska, W., Stachurska, A., Karpińska, K., Sikorska, J., Kiedrowski, M., ... & Czarnocka, B.
DNA repair, 95, 102954
Resolution enhancement in NMR spectra by deconvolution with compressed sensing reconstruction
Kazimierczuk, K., Kasprzak, P., Georgoulia, P. S., Matečko-Burmann, I., Burmann, B. M., Isaksson, L., ... & Orekhov, V. Y.
Chemical Communications, 56(93), 14585-14588
Enhancing compression level for more efficient compressed sensing and other lessons from NMR spectroscopy
Gołowicz, D., Kasprzak, P., & Kazimierczuk, K.
Sensors, 20(5), 1325
Blue-Shift Hydrogen Bonds in Silyltriptycene Derivatives: Antibonding σ* Orbitals of the Si−C Bond as Effective Acceptors of Electron Density
Mames, A., Gołowicz, D., Pietrzak, M., Kazimierczuk, K., Szymański, S., & Ratajczyk, T.
ChemPhysChem, 21(6), 540-545
On Jackknifed Greedy Algorithms and Their Applications in NMR
Kasprzak, P., Kazimierczuk, K., & Shchukina, A. L.
Bulletin of the Russian Academy of Sciences: Physics, 84(11), 1335-1340
A novel high-dimensional NMR experiment for resolving protein backbone dihedral angle ambiguities
Kauffmann, C., Kazimierczuk, K., Schwarz, T. C., Konrat, R., & Zawadzka-Kazimierczuk, A.
Journal of biomolecular NMR, 74(4), 257-265
Computational modelling of three-dimensional genome structure
Plewczynski, D., & Kadlof, M.
Methods (San Diego, Calif.)
JUPPI: A multi-level feature based method for PPI prediction and a refined strategy for performance assessment
Halder, A. K., Bandyopadhyay, S. S., Chatterjee, P., Nasipuri, M., Plewczynski, D., & Basu, S.
IEEE/ACM Transactions on Computational Biology and Bioinformatics
Aggregated network centrality shows non-random structure of genomic and proteomic networks
Halder, A. K., Denkiewicz, M., Sengupta, K., Basu, S., & Plewczynski, D.
Methods, 181, 5-14
Ultrastructural visualization of 3D chromatin folding using volume electron microscopy and DNA in situ hybridization
Trzaskoma, P., Ruszczycki, B., Lee, B., Pels, K. K., Krawczyk, K., Bokota, G., ... & Wilczyński, G. M.
Nature communications, 11(1), 1-9
3D-GNOME 2.0: a three-dimensional genome modeling engine for predicting structural variation-driven alterations of chromatin spatial structure in the human genome
Wlasnowolski, M., Sadowski, M., Czarnota, T., Jodkowska, K., Szalaj, P., Tang, Z., ... & Plewczynski, D.
Nucleic Acids Research, 48(W1), W170-W176
The Mixture of Autoregressive Hidden Markov Models of Morphology for Dentritic Spines During Activation Process
Urban, P., Rezaei Tabar, V., Denkiewicz, M., Bokota, G., Das, N., Basu, S., & Plewczynski, D.
Journal of Computational Biology, 27(9), 1471-1485
The effects of temperature on the proxies of visual detection of Danio rerio larvae: observations from the optic tectum
Babkiewicz, E., Bazała, M., Urban, P., Maszczyk, P., Markowska, M., & Gliwicz, Z. M.
Biology open, 9(7)
Daphnia depth selection in gradients of light intensity from different artificial sources: an evolutionary trap?
Maszczyk, P., Tałanda, J., Babkiewicz, E., Leniowski, K., & Urban, P.
Limnology and Oceanography
Topoisomerase 1 prevents replication stress at R-loop-enriched transcription termination sites
Promonet, A., Padioleau, I., Liu, Y., Sanz, L., Biernacka, A., Schmitz, A. L., ... & Pasero, P.
Nature communications, 11(1), 1-12
Free energy-based model of CTCF-mediated chromatin looping in the human genome
Dawson, W. K., Lazniewski, M., & Plewczynski, D.
Methods, 181, 35-51
Chromatin topology reorganization and transcription repression by PML-RARα in acute promyeloid leukemia
Wang, P., Tang, Z., Lee, B., Zhu, J. J., Cai, L., Szalaj, P., ... & Ruan, Y.
Genome biology, 21, 1-21
Exploring 3D chromatin contacts in gene regulation: The evolution of approaches for the identification of functional enhancer-promoter interaction
Xu, H., Zhang, S., Yi, X., Plewczynski, D., & Li, M. J.
Computational and structural biotechnology journal, 18, 558-570
Identification of miRNA Biomarkers for Diverse Cancer Types Using Statistical Learning Methods at the Whole-Genome Scale
Sarkar, J. P., Saha, I., Lancucki, A., Ghosh, N., Wlasnowolski, M., Bokota, G., ... & Plewczynski, D.
Frontiers in genetics, 11, 982
Conserved internal hydration motifs in protein kinases
Setny, P.
Proteins: Structure, Function, and Bioinformatics, 88(12), 1578-1591
GridSolvate: A Web Server for the Prediction of Biomolecular Hydration Properties
Setny, P.
Journal of chemical information and modeling
Highly efficient sunlight-driven seawater splitting in a photo-electrochemical cell with chlorine evolved at nanostructured WO3 photo-anode and hydrogen stored as hydride within metallic cathode
Jadwiszczak, M., Jakubow‐Piotrowska, K., Kedzierzawski, P., Bienkowski, K., & Augustynski, J.
Advanced Energy Materials, 10(3), 1903213
Rates of Multipartite Entanglement Transformations
Streltsov, A., Meignant, C., & Eisert, J.
Physical Review Letters, 125(8), 080502
Direct estimation of quantum coherence by collective measurements
Yuan, Y., Hou, Z., Tang, J. F., Streltsov, A., Xiang, G. Y., Li, C. F., & Guo, G. C.
npj Quantum Information, 6(1), 1-5
Quantum state merging with bound entanglement
Streltsov, A.
New Journal of Physics, 22(2), 023032
Entanglement negativity as a universal non-Markovianity witness
Kołodyński, J., Rana, S., & Streltsov, A.
Physical Review A, 101(2), 020303
Quantum coherence and state conversion: theory and experiment
Wu, K. D., Theurer, T., Xiang, G. Y., Li, C. F., Guo, G. C., Plenio, M. B., & Streltsov, A.
npj Quantum Information, 6(1), 1-9
Generalised Uncertainty Relations for Angular Momentum and Spin in Quantum Geometry
Lake, M. J., Miller, M., & Liang, S. D.
Universe, 6(4), 56
Restriction of S-adenosylmethionine conformational freedom by knotted protein binding sites
Perlinska, A. P., Stasiulewicz, A., Nawrocka, E. K., Kazimierczuk, K., Setny, P., & Sulkowska, J. I.
PLoS computational biology, 16(5), e1007904
A Guide to Targeting the Endocannabinoid System in Drug Design
Stasiulewicz, A., Znajdek, K., Grudzień, M., Pawiński, T., & Sulkowska, J. I.
International journal of molecular sciences, 21(8), 2778
On folding of entangled proteins: knots, lassos, links and theta-curves
Sulkowska, J. I.
Current opinion in structural biology, 60, 131-141
The Folding of Knotted Proteins: Distinguishing the Distinct behavior of Shallow and Deep Knots
Piejko, M., Niewieczerzal, S., & Sulkowska, J. I.
Israel Journal of Chemistry, 60(7), 713-724
Topoly: Python package to analyze the topology of polymers
Dabrowski-Tumanski, P., Rubach, P., Niemyska, W., Gren, B. A., & Sulkowska, J. I.
Briefings in Bioinformatics
Urban Evolutionary Biology
Szulkin, M., Munshi-South, J., & Charmantier, A.
Urban evolutionary biology. Oxford University Press, USA
Mammals in Urban Environments
Chatelain M. & Szulkin M.
The 2nd Edition of the Routledge Handbook of Urban Ecology
The complexity of urban eco-evolutionary dynamics
Alberti, M., Palkovacs, E. P., Roches, S. D., Meester, L. D., Brans, K. I., Govaert, L., ... & Verrelli, B. C.
BioScience, 70(9), 772-793
Antibacterial peptide nucleic acids – facts and perspectives
Wojciechowska, M., Równicki, M., Mieczkowski, A., Miszkiewicz, J., & Trylska, J.
Molecules, 25(3), 559
Extracellular loops of BtuB facilitate transport of vitamin B12 through the outer membrane of E. coli
Pieńko, T., & Trylska, J.
PLOS Computational Biology, 16(7), e1008024
The effect of the crowded environment on the activity and inhibition of the NS3/4A protease
Popielec, A., Ostrowska, N., Wojciechowska, M., Feig, M., & Trylska, J.
Biochimie, 176, 169-180
Targeting type II toxin-antitoxin systems as antibacterial strategies
Równicki, M., Lasek, R., Trylska, J., & Bartosik, D.
Toxins, 12(9), 568
Conformational changes of anoplin, W-MreB1-9 and (KFF)3K peptides in proximity to membrane environments
Wojciechowska, M., Miszkiewicz, J., & Trylska, J.
International journal of molecular sciences, 21(24), 9672
Molecular modelling of mechanisms of decomposition of ruthenium metathesis catalysts by acrylonitrile
Jawiczuk, M., Młodzikowska-Pieńko, K., Osella, S., & Trzaskowski, B.
Organometallics, 39(2), 239-246
Synthesis and anti–tumour and immunomodulating activities of diosgenin and tigogenin conjugates
Michalak, O., Krzeczyński, P., Cieślak, M., Cmoch, P., Cybulski, M., Krolewska-Golińska, K., ... & Ostrowska, K.
The Journal of steroid biochemistry and molecular biology, 198, 105573
The anti-inflammatory potential of cefazolin as common gamma chain cytokine inhibitor
Żyżyńska-Granica, B., Trzaskowski, B., Dutkiewicz, M., Zegrocka-Stendel, O., Machcińska, M., Bocian, K., ... & Koziak, K.
Scientific reports, 10(1), 1-12
Rate-Limiting Steps in the Intramolecular C-H Activation of Ruthenium N-Heterocyclic Carbene Complexes
Młodzikowska-Pieńko, K., & Trzaskowski, B.
The Journal of Physical Chemistry A, 124(18), 3609-3617
6-Acetyl-5-hydroxy-4,7-dimethylcoumarin derivatives: Design, synthesis, modeling studies, 5-HT1A, 5-HT2A and D2 receptors affinity
Ostrowska, K., Leśniak, A., Karczyńska, U., Jeleniewicz, P., Głuch-Lutwin, M., Mordyl, B., ... & Bujalska-Zadrożny, M.
Bioorganic chemistry, 100, 103912
Impact of the olefin structure on the catalytic cycle and decomposition rates of Hoveyda-Grubbs metathesis catalyst
Jawiczuk, M., Młodzikowska-Pieńko, K., & Trzaskowski, B.
Physical Chemistry Chemical Physics, 22(23), 13062-13069
Impact of the Carbene Derivative Charge on the Decomposition Rates of Hoveyda-Grubbs-Like Metathesis Catalysts
Jawiczuk, M., Marczyk, A., Młodzikowska-Pieńko, K., & Trzaskowski, B.
The Journal of Physical Chemistry A, 124(30), 6158-6167
Decomposition of ruthenium olefin metathesis catalyst; a review
Jawiczuk, M., Marczyk, A., & Trzaskowski, B.
Catalysts, 10(8), 887
Sterically tuned N-heterocyclic carbene ligands for the efficient formation of hindered products in Ru-catalyzed olefin metathesis
Planer, S., Małecki, P., Trzaskowski, B., Kajetanowicz, A., & Grela, K.
ACS catalysis, 10(19), 11394-11404
Cross metathesis with acrylates: N-heterocyclic carbene (NHC)- versus cyclic alkyl amino carbene (CAAC)-based ruthenium catalysts, an unanticipated influence of the carbene type on efficiency and selectivity of the reaction
Kaczanowska, K., Trzaskowski, B., Peszczyńska, A., Tracz, A., Gawin, R., Olszewski, T. K., & Skowerski, K.
ChemCatChem, 12(24), 6366-6374
Superseding ß-Diketiminato Ligands: An Amido Imidazoline-2-Imine Ligand Stabilizes the Exhaustive Series of B=X Boranes (X = O, S, Se, Te)
Frank, R., Trzaskowski, B., Denker, L., & Dolati, H.
Angewandte Chemie
Experimental Observation of Strong Exciton Effects in Graphene Nanoribbons
Tries, A., Osella, S., Zhang, P., Xu, F., Ramanan, C., Kläui, M., ... & Wang, H. I.
Nano letters, 20(5), 2993-3002
A Curved Graphene Nanoribbon with Multi-Edge Structure and High Intrinsic Charge Carrier Mobility
Niu, W., Ma, J., Soltani, P., Zheng, W., Liu, F., Popov, A. A., ... & Mai, Y.
Journal of the American Chemical Society, 142(43), 18293-18298
Ancient DNA and Genetic Engineering
Węgleński, P.
Wydawnictwa Uniwersytetu Warszawskiego
New ancient Eastern European Yersinia pestis genomes illuminate the dispersal of plague in Europe
Morozova, I., Kasianov, A., Bruskin, S., Neukamm, J., Molak, M., Batieva, E., ... & Schuenemann, V. J.
Philosophical Transactions of the Royal Society B, 375(1812), 20190569
2000-year-old pathogen genomes reconstructed from metagenomic analysis of Egyptian mummified individuals
Neukamm, J., Pfrengle, S., Molak, M., Seitz, A., Francken, M., Eppenberger, P., ... & Schuenemann, V. J.
BMC biology, 18(1), 1-18
Ancestors of domestic cats in Neolithic Central Europe: Isotopic evidence of a synanthropic diet
Krajcarz, M., Krajcarz, M. T., Baca, M., Baumann, C., Van Neer, W., Popović, D., ... & Bocherens, H.
Proceedings of the National Academy of Sciences, 117(30), 17710-17719
The impact of major warming at 14.7 ka on environmental changes and activity of Final Palaeolithic hunters at a local scale (Orawa-Nowy Targ Basin, Western Carpathians, Poland
Lemanik, A., Baca, M., Wertz, K., Socha, P., Popović, D., Tomek, T., ... & Nadachowski, A.
Archaeological and Anthropological Sciences, 12(3), 1-21
Diverse responses of common vole (Microtus arvalis) populations to Late Glacial and Early Holocene climate changes – Evidence from ancient DNA
Baca, M., Popović, D., Baca, K., Lemanik, A., Doan, K., Horáček, I., ... & Nadachowski, A.
Quaternary Science Reviews, 233, 106239
Molecular species assignment and dating of putative pre-Columbian dog remains excavated from Bolivia
Popović, D., España, V. M., Ziółkowski, M., Weglenski, P., & Baca, M.
Journal of Archaeological Science: Reports, 31, 102273
Influence of membrane phase on the optical properties of DPH
Osella, S., Paloncýová, M., Sahi, M., & Knippenberg, S.
Molecules, 25(18), 4264
Push/pull effect as driving force for different optical response of azobenzene in a biological environment
Knippenberg, S., & Osella, S.
The Journal of Physical Chemistry C, 124(15), 8310-8322
Non-Stationary Complementary Non-Uniform Sampling (NOSCO NUS) for Fast Acquisition of Serial 2D NMR Titration Data
Romero, J. A., Nawrocka, E. K., Shchukina, A., Blanco, F. J., Diercks, T., & Kazimierczuk, K.
Angewandte Chemie, 132(52), 23702-23705
Benefits of time-resolved nonuniform sampling in reaction monitoring: The case of aza-Michael addition of benzylamine and acrylamide
Gołowicz, D., Kaźmierczak, M., & Kazimierczuk, K.
Magnetic Resonance in Chemistry, 59(3), 213-220
Enhancing benchtop NMR spectroscopy by means of sample shifting
Romero, J. A., Kazimierczuk, K., & Gołowicz, D.
Analyst, 145(22), 7406-7411
SUNRISE: Solar Energy for a Circular Economy. Technological Roadmap
Faber C., Allahverdiyeva-Rinne Y., Artero V., Baraton L., Barbieri A., Bercegol H., Fleischer M., Huynhthi H., Kargul J., Lepaumier H., Lopez L., Magnuson A. & Roth A.
Transition Metal-Free and Regioselective Vinylation of Phosphine Oxides and H-Phosphinates with VBX reagents
Castoldi, L., Rajkiewicz, A. A., & Olofsson, B. (2020)
Chemical Communications, 56(92), 14389-14392
Solid-Phase Synthesis of RNA 5′-Azides and Their Application for Labeling, Ligation, and Cyclization Via Click Chemistry
Warminski, M., Kowalska, J., & Jemielity, J.
Current Protocols in Nucleic Acid Chemistry, 82(1), e112
Efficient Synthesis of Trifluoromethylated Purine Ribonucleosides and Ribonucleotides
Chrominski, M., Kowalska, J., & Jemielity, J.
Current Protocols in Nucleic Acid Chemistry, 83(1), e118
5′-fluoro(di)phosphate-labeled oligonucleotides are versatile molecular probes for studying nucleic acid secondary structure and interactions by 19F NMR
Baranowski, M. R., Warminski, M., Jemielity, J., & Kowalska, J.
Nucleic acids research, 48(15), 8209-8224
Exploring tryptamine conjugates as pronucleotides of phosphate-modified 7-methylguanine nucleotides targeting cap-dependent translation
Golojuch, S., Kopcial, M., Strzelecka, D., Kasprzyk, R., Baran, N., Sikorski, P. J., ... & Jemielity, J.
Bioorganic & medicinal chemistry, 28(13), 115523
Direct High-Throughput Screening Assay for mRNA Cap Guanine-N7 Methyltransferase Activity
Kasprzyk, R., Fido, M., Mamot, A., Wanat, P., Smietanski, M., Kopcial, M., ... & Jemielity, J.
Chemistry (Weinheim an der Bergstrasse, Germany)
Synthesis of trifluoromethylated purine ribonucleotides and their evaluation as 19F NMR probes
Chrominski, M., Baranowski, M. R., Chmielinski, S., Kowalska, J., & Jemielity, J.
The Journal of organic chemistry, 85(5), 3440-3453
Phosphodiester modifications in mRNA polyA tail prevent deadenylation without compromising protein expression
Strzelecka, D., Smietanski, M., Sikorski, P. J., Warminski, M., Kowalska, J., & Jemielity, J.
RNA, 26(12), 1815-1837
Structural and thermal study of solvent-free tetrabutylammonium chloride and its novel solvates
Dołębska, W., & Jaroń, T.
Journal of Molecular Structure, 1206, 127748
Inclusion of Neon into an Yttrium Borohydride Structure at Elevated Pressure – An Experimental and Theoretical Study
Jaroń, T., Starobrat, A., Struzhkin, V. V., & Grochala, W.
European Journal of Inorganic Chemistry, 2020(40), 3846-3851
When fluorine messes up: the impact of electron scavenger on properties of molecules and solids
Grochala, W.
The Curious World of Fluorinated Molecules (pp. 15-57). Elsevier
Gigantic work function in layered AgF2
Wegner, W., Tokár, K., Lorenzana, J., Derzsi, M., & Grochala, W.
Physical Chemistry Chemical Physics, 22(38), 21809-21815
Electrosynthesis of unique Ag(II) fluoride quantum antiferromagnets in anhydrous HF
Połczyński, P., Jurczakowski, R., Mazej, Z., Dobrzycki, Ł., Grzelak, A., & Grochala, W.
European Journal of Inorganic Chemistry, 2020(33), 3151-3157
Synthesis of Pummerer’s ketone and its analogs by iodosobenzene-promoted oxidative phenolic coupling
Kałek, M., Sarkar, S., Ghosh, M., Kałek, M. (2020)
Tetrahedron Lett. (61), 152459
Epitaxial engineering of flat silver(II) fluoride cuprate analogs
Grzelak, A., Su, H., Yang, X., Kurzydłowski, D., Lorenzana, J., & Grochala, W.
Physical Review Materials, 4(8), 084405
The high covalence of metal-ligand bonds as stability limiting factor: the case of Rh(IX)O4+ and Rh(IX)NO3
Domański, M. A., Wolański, Ł., Szarek, P., & Grochala, W.
Journal of molecular modeling, 26(3), 1-7
PtX as the limit of high oxidation states in oxide–nitride species
Wolański, Ł., Domański, M. A., Grochala, W., & Szarek, P.
Chemical Communications, 56(86), 13137-13140
Mechanism of iodine(III)-promoted oxidative dearomatizing hydroxylation of phenols: evidence for radical-chain pathway
Kałek, M., Kraszewski, K., Tomczyk, I., Bieńkowski, K., Solarska, R. (2020)
Chem. Eur. J. (26), 11584-11592
Mg2+-Dependent Methyl Transfer by a Knotted Protein: A Molecular Dynamics Simulation and Quantum Mechanics Study
Kałek, M., Perlińska, A., Sułkowska, J. (2020)
ACS Catalysis (10), 8058-8068
Toward the synthesis, fluorination and application of N-graphyne
Abdi, G., Filip, A., Krajewski, M., Kazimierczuk, K., Strawski, M., Szarek, P., ... & Szczurek, A.
RSC Advances, 10(66), 40019-40029
Aquatic stem group myriapods close a gap between molecular divergence dates and the terrestrial fossil record
Edgecombe, G. D., Strullu-Derrien, C., Góral, T., Hetherington, A. J., Thompson, C., & Koch, M.
Proceedings of the National Academy of Sciences, 117(16), 8966-8972
Dostępne i przyszłe formy magazynowania energii
Chmielewski A., Kupecki J., Szabłowski Ł., Fijałkowski K.J., Zawieska J. & Bogodziński K.
Raport Fundacji WWF Polska: Dostępne i przyszłe formy magazynowania energii
Autorstwo utworu naukowego a autorstwo wynalazku i prawo do patentu na polskich uczelniach
Rzepecka, M., Malewska, E., & Fijałkowski, K. J.
Przegląd Prawa Konstytucyjnego, (3 (55)), 119-134
Toward the synthesis, fluorination and application of N–graphyne
Abdi, G., Filip, A., Krajewski, M., Kazimierczuk, K., Strawski, M., Szarek, P., ... & Szczurek, A.
RSC Advances, 10(66), 40019-40029
Metal (boro-)hydrides for high energy density hydrogen storage and relevant emerging technologies
Bannenberg, L. J., Heere, M., Benzidi, H., Montero, J., Dematteis, E. M., Suwarno, S., ... & El Kharbachi, A.
International Journal of Hydrogen Energy
Effect of the His-Tag Location on Decapping Scavenger Enzymes and Their Hydrolytic Activity toward Cap Analogs
Ferenc-Mrozek, A., Bojarska, E., Stepinski, J., Darzynkiewicz, E., & Lukaszewicz, M.
ACS omega, 5(19)
A library of coiled-coil domains: from regular bundles to peculiar twists
Szczepaniak, K., Bukala, A., da Silva Neto, A. M., Ludwiczak, J., & Dunin-Horkawicz, S.
Bioinformatics
C8J_1298, a bifunctional thiol oxidoreductase of Campylobacter jejuni, affects Dsb (disulfide bond) network functioning
Banaś, A. M., Bocian-Ostrzycka, K. M., Plichta, M., Dunin-Horkawicz, S., Ludwiczak, J., Płaczkiewicz, J., & Jagusztyn-Krynicka, E. K.
PloS one, 15(3), e0230366
Self-analysis of repeat proteins reveals evolutionarily conserved patterns
Merski, M., Młynarczyk, K., Ludwiczak, J., Skrzeczkowski, J., Dunin-Horkawicz, S., & Górna, M. W.
BMC bioinformatics, 21, 1-17
Ovarian carcinoma immunoreactive antigen-like protein 2 (OCIAD2) is a novel metazoan specific complex III assembly factor
Chojnacka, K. J., Mohanraj, K., Callegari, S., Mussulini, B. H. M., Elanchelyan, P., Gosk, A., ... & Chacińska, A.
bioRxiv
Nutritional status and fecundity are synchronised by muscular exopheresis
Turek, M., Piechota, M., Shanmugam, N., Niklewicz, M., Kowalski, K., Chacinska, A., & Pokrzywa, W.
bioRxiv
Mitochondrial Oxidative Stress Induces Rapid Intermembrane Space/Matrix Translocation of Apurinic/Apyrimidinic Endonuclease 1 Protein through TIM23 Complex
Barchiesi, A., Bazzani, V., Tolotto, V., Elancheliyan, P., Wasilewski, M., Chacinska, A., & Vascotto, C.
Journal of Molecular Biology, 432(24), 166713
COA6 Facilitates Cytochrome c Oxidase Biogenesis as Thiol-reductase for Copper Metallochaperones in Mitochondria
Pacheu-Grau, D., Wasilewski, M., Oeljeklaus, S., Gibhardt, C. S., Aich, A., Chudenkova, M., ... & Rehling, P.
Journal of molecular biology, 432(7), 2067-2079
Mitochondrial control of cellular protein homeostasis
Mohanraj K., Nowicka U. & Chacińska A.
Biochem J (2020) 477 (16): 3033–3054
Ubiquitin – proteasome system and its crosstalk with mitochondria as therapeutic targets in medicine
Kodroń A., Mussulini B.H., Pilecka I., & Chacińska A.
Pharmacological Research
The DIRAC code for relativistic molecular calculations
Saue, T., Bast, R., Gomes, A. S. P., Jensen, H. J. A., Visscher, L., Aucar, I. A., ... & van Stralen, J. N.
The Journal of chemical physics, 152(20), 204104
Investigating solvent effects on the magnetic properties of molybdate ions (MoO2-/4) with relativistic embedding
Halbert L., Olejniczak M., Vallet V., Severo A. & Gomes P.
International Journal of Quantum Chemistry
Investigating solvent effects on the magnetic properties of molybdate ions () with relativistic embedding
Halbert L., Olejniczak M., Vallet V., Severo A. & Gomes P.
International Journal of Quantum Chemistry
A Topological Data Analysis perspective on noncovalent interactions in relativistic calculations
Olejniczak M.
International Journal of Quantum Chemistry
Geometric approach to quantum statistical inference
Jarzyna M., Kołodyński J.
IEEE Journal on Selected Areas in Information Theory
Time-frequency optical filtering: efficiency vs. temporal-mode discrimination in incoherent and coherent implementations
Banaszek K.
Optics Express
Sub-Rayleigh resolution of two incoherent sources by array homodyning
Datta C., Jarzyna M., Len Y.L., Łukanowski K., Kołodyński J., & Banaszek K.
Physical Review A
Quantum Limits in Optical Communications
Banaszek K., Kunz L., Jachura M. & Jarzyna M.
Journal of Lightwave Technology
Low cost limit of classical communication with restricted quantum measurements
Kunz L., Jarzyna M., Zwoliński W., & Banaszek K.
New Journal of Physics
CAP-MAP: cap analysis protocol with minimal analyte processing, a rapid and sensitive approach to analysing mRNA cap structures
Galloway A, Atrih A, Grzela R, Darzynkiewicz E, Ferguson MAJ, Cowling VH.
Open Biology. 2020
Development of bis-ANS-based modified fluorescence titration assay for IFIT/RNA studies
Dobieżyńska, A., Miszkiewicz, J., Darżynkiewicz, Z. M., Tyras, M., Stankiewicz-Drogoń, A., Trylska, J., ... & Grzela, R.
Biochemical and Biophysical Research Communications, 533(3), 391-396
Mitochondrial protein biogenesis in the synapse is supported by local translation
Kuzniewska B., Cysewski D., Wasilewski M., Sakowska P., Milek J., Kulinski T.M., Winiarski M., Kozielewicz P., Knapska E., Dadlez M., Chacinska A., Dziembowski A., Dziembowska M.
EMBO Rep. (2020)
Mechanisms of astrocyte development
Sardar D., Cheng Y-T., Szewczyk L.M., Deneen B., Molofsky A.V.
Patterning and Cell Type Specification in the Developing CNS and PNS- Second Edition, 2020
TCF7L2 regulates postmitotic differentiation programmes and excitability patterns in the thalamus
Lipiec M.A., Bem J., Koziński K., Chakraborty C., Urban-Ciećko J., Zajkowski T., Dąbrowski M., Szewczyk Ł.M., Angel Toval A., Ferran J.L., Nagalski A., Wiśniewska M.B.
Development (2020)
Temporal imaging for ultra-narrowband few-photon states of light.
Mazelanik, M., Leszczyński, A., Lipka, M., Parniak, M., and Wasilewski, W.
 Optica, 7(3):203–208.
Resolution limits of spatial mode demultiplexing with noisy detection. 
Len, Y. L., Datta, C., Parniak, M., and Banaszek, K.
International Journal of Quantum Information, 18(01):1941015.
Benzoxazepine-Derived Selective, Orally Bioavailable Inhibitor of Human Acidic Mammalian Chitinase
Andryianau, G., Kowalski, M., Piotrowicz, M. C., Rajkiewicz, A. A., Dymek, B., Sklepkiewicz, P. L., ... & Mazur, M. (2020)
ACS Medicinal Chemistry Letters, 11(6), 1228-1235.
N-Heterocyclic Carbene-Catalyzed Synthesis of Ynones via C–H Alkynylation of Aldehydes with Alkynyliodonium Salts—Evidence for Alkynyl Transfer via Direct Substitution at Acetylenic Carbon
Rajkiewicz, A. A., Wojciechowska, N., & Kalek, M. (2020)
ACS Catalysis, 10(1), 831-841
How do lipid nanocarriers – Cubosomes affect electrochemical properties of DMPC bilayers deposited on gold (111) electrodes?
Alvarez-Malmagro, J., Jabłonowska, E., Nazaruk, E., Szwedziak, P., & Bilewicz, R. (2020).
Bioelectrochemistry, 134(107516).
Quantum Fingerprinting Over AWGN Channels With Power-Limited Optical Signals
Lipka, M., Jarzyna, M., & Banaszek, K.
IEEE Journal on Selected Areas in Communications, 38(3), 496-505
Plasmonic enhancement of photocurrent generation in Photosystem I–based hybrid electrode
Szalkowski, M., Harputlu, E., Kiliszek, M., Mackowski, S., Unlu, C. G., Ocakoglu, K., ... & Kowalska, D.
Journal of Materials Chemistry C.
Silver Island Film for Enhancing Light Harvesting in Natural Photosynthetic Proteins
Kowalska D, Szalkowski M, Sulowska K, Buczynska D, Niedziółka-Jonsson J, Jonsson-Niedziółka M, Kargul J, Lokstein H, Maćkowski S
Int. J. Mol. Sci., 21, 2451
Architecture and function of biohybrid solar cell and solar-to-fuel nanodevices
Osella, S., Kargul, J., Izzo, M., & Trzaskowski, B.
Theory and Simulation in Physics for Materials Applications (pp. 227-274). Springer, Cham.
The association between stressors and telomeres in non-human vertebrates: a meta-analysis
Chatelain, M., Drobniak, S. M., & Szulkin, M.
Ecology letters, 23(2), 381-398.
Genus for biomolecules
Rubach, P., Zajac, S., Jastrzebski, B., Sulkowska, J. I., & Sułkowski, P.
Nucleic acids research, 48(D1), D1129-D1135.
Knot_pull—python package for biopolymer smoothing and knot detection.
Jarmolinska, A. I., Gambin, A., & Sulkowska, J. I.
Bioinformatics, 36(3), 953-955.
RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools
Magnus, M., Antczak, M., Zok, T., Wiedemann, J., Łukasiak, P., Cao, Y., Bujnicki, J. M., Westhof, E., Szachniuk, M., & Miao, Z. (2020).
Nucleic Acids Research, 48(2), 576-588.
On the nature of uncoupled chlorophylls in the extremophilic photosystem I-light harvesting I supercomplex
Szewczyk, S., Abram, M., Białek, R., Haniewicz, P., Karolczak, J., Gapiński, J., ... & Gibasiewicz, K.
Biochimica et Biophysica Acta (BBA)-Bioenergetics, 1861(2), 148136.
Purine and pyrimidine dinucleoside polyphosphates differentially affect the phenylpropanoid pathway in Vitis vinifera L. cv. Monastrell suspension cultured cells.
Pietrowska-Borek, M., Wojdyła-Mamoń, A., Dobrogojski, J., Młynarska-Cieślak, A., Baranowski, M. R., Dąbrowski, J. M., ... & Guranowski, A.
Plant Physiology and Biochemistry, 147, 125-132.
A low temperature pyrolytic route to amorphous quasi-hexagonal boron nitride from hydrogen rich (NH 4) 3 Mg (BH 4) 5
Wegner, W., Fijalkowski, K. J., & Grochala, W.
Dalton Transactions, 49(2), 336-342.
Alpha-catulin, a new player in a Rho dependent apical constriction that contributes to the mouse neural tube closure.
Karpińska K., Cao C., Yamamoto V., Gielata M., Kobielak A.
Frontiers in Cell and Developmental Biology, 8, 154.
Visible-light activation of low-cost rutile TiO2 photoanodes for photoelectrochemical water splitting
Barczuk, P.J., Noworyta, K.R., Dolata, M., Jakubow-Piotrowska, K. & Augustynski, J. (2020).
Solar Energy Materials and Solar Cells, 208, 110424.
Kinetic analysis of IFIT1 and IFIT5 interactions with different native and engineered RNAs and its consequences for designing mRNA-based therapeutics
Miedziak, B., Dobieżyńska, A., Darżynkiewicz, Z. M., Bartkowska, J., Miszkiewicz, J., Kowalska, J., ... & Darzynkiewicz, E.
RNA, 26(1), 58-68.
Spring Model – chromatin modeling tool based on OpenMM
Kadlof, M., Rozycka, J., & Plewczynski, D.
Methods
Disentangling the role of solvent polarity and protein solvation in folding and self-assembly of α-lactalbumin
Bucciarelli, S., Sayedi, E. S., Osella, S., Trzaskowski, B., Vissing, K. J., Vestergaard, B., & Foderà, V.
Journal of colloid and interface science
Fast time-resolved NMR with non-uniform sampling
Gołowicz, D., Kasprzak, P., Orekhov, V., & Kazimierczuk, K.
Progress in Nuclear Magnetic Resonance Spectroscopy.
Remodeling of excitation energy transfer in extremophilic red algal PSI-LHCI complex during light adaptation
Abram, M., Białek, R., Szewczyk, S., Karolczak, J., Gibasiewicz, K., & Kargul, J.
Biochimica et Biophysica Acta (BBA)-Bioenergetics, 1861(1), 148093.