Entangled Proteins: Knots, Slipknots, Links, and Lassos
Sułkowska, J. I., & Sułkowski, P.
The Role of Topology in Materials, Springer
New calcium-free Na2O-Al2O3-P2O5 bioactive glasses with potential applications in bone tissue engineering
Jeznach, O., Gajc, M., Korzeb, K., Kłos, A., Orliński, K., Stępień, R., . . . & Pawlak, D. A.
Journal of the American Ceramic Society, 101(2), 602-611.
Vitamin B12 transports modified RNA into E. coli and S. Typhimurium cells
Giedyk, M., Jackowska, A., Równicki, M., Kolanowska, M., Trylska, J., & Gryko, D.
Chemical Communications, 55(6), 763-766.
Variability of the core geometry in parallel coiled-coil bundles
Szczepaniak, K., Ludwiczak, J., Winski, A., & Dunin-Horkawicz, S.
Journal of Structural Biology, 204(1), 117-124.
Towards Catalytic Antibiotics: Redesign of Aminoglycosides To Catalytically Disable Bacterial Ribosomes
Smolkin, B., Khononov, A., Pieńko, T., Shavit, M., Belakhov, V., Trylska, J., & Baasov, T
ChemBioChem, 20(2), 247-259.
Towards a complete map of the human long non-coding RNA transcriptome
Uszczynska-Ratajczak, B., Lagarde, J., Frankish, A., Guigó, R., & Johnson, R.
Nature Reviews Genetics, 19(9), 535-548.
Three-dimensional organization and dynamics of the genome
Szalaj, P., & Plewczynski, D.
Cell Biology and Toxicology, 34(5), 381-404.
The microbial toxicity of quaternary ammonium ionic liquids is dependent on the type of lipopolysaccharide
Kowalczyk, P., Borkowski, A., Czerwonka, G., Cłapa, T., Cieśla, J., Misiewicz, A., . . . & Szala, M.
Journal of Molecular Liquids, 266, 540-547.
The history of Crimean red deer population and Cervus phylogeography in Eurasia
Doan, K., Mackiewicz, P., Sandoval-Castellanos, E., Stefaniak, K., Ridush, B., Dalén, L., . . . & Stankovic, A.
Zoological Journal of the Linnean Society, 183(1), 208-225.
The APS-bracket – A topological tool to classify lasso proteins, RNAs and other tadpole-like structures
Dabrowski-Tumanski, P., & Sulkowska, J. I.
Reactive and Functional Polymers, 132, 19-25.
Protein Knotting by Active Threading of Nascent Polypeptide Chain Exiting from the Ribosome Exit Channel
Dabrowski-Tumanski, P., Piejko, M., Niewieczerzal, S., Stasiak, A., & Sulkowska, J. I.
The Journal of Physical Chemistry B, 122(49), 11616-11625
Preparation of a series of lanthanide borohydrides and their thermal decomposition to refractory lanthanide borides
Wegner, W., Jaroń, T., & Grochala, W.
Journal of Alloys and Compounds, 744, 57-63
Phylogenetic and Phylogenomic Definition of Rhizopus Species
Gryganskyi, A. P., Golan, J., Dolatabadi, S., Mondo, S., Robb, S., Idnurm, A., . . . Stajich, J. E.
Genes|Genomes|Genetics, 8(6), 2007-2018
Orientation of photosystem I on graphene through cytochrome c(553) leads to improvement in photocurrent generation
Kiliszek, M., Harputlu, E., Szalkowski, M., Kowalska, D., Unlu, C. G., Haniewicz, P., . . . & Kargul, J.
Journal of Materials Chemistry A, 6(38), 18615-18626
Oncogenes expand during evolution to withstand somatic amplification
Wang, X., Li, X., Zhang, L., Wong, S. H., Wang, M. H., Tse, G., Plewczyński,D. . . . & Wu, W. K.
Annals of Oncology, 29(11), 2254-2260.
Novel Nanostructures and Materials for Strong Light-Matter Interactions
Baranov, D. G., Wersäll, M., Cuadra, J., Antosiewicz, T. J., & Shegai, T.
ACS Photonics, 5(1), 24-42
NMR shielding constants in group 15 trifluorides
Field-Theodore, T. E., Olejniczak, M., Jaszuński, M., & Wilson, D. J.
Physical Chemistry Chemical Physics, 20(35), 23025-23033.
mRNAs biotinylated within the 5′ cap and protected against decapping: new tools to capture RNA–protein complexes
Bednarek, S., Madan, V., Sikorski, P. J., Bartenschlager, R., Kowalska, J., & Jemielity, J.
Philosophical Transactions of the Royal Society B: Biological Sciences, 373(1762), 20180167
Kinetics of Huperzine A Dissociation from Acetylcholinesterase via Multiple Unbinding Pathways
Rydzewski, J., Jakubowski, R., Nowak, W., & Grubmüller, H.
Journal of Chemical Theory and Computation, 14(6), 2843-2851
Impact of climate and humans on the range dynamics of the woolly mammoth (Mammuthus primigenius) in Europe during MIS 2
Nadachowski, A., Lipecki, G., Baca, M., Żmihorski, M., & Wilczyński, J.
Quaternary Research, 90(3), 439-456
Hypermethylation of TRIM59 and KLF14 influences cell death signaling in familial Alzheimer’s disease
Wezyk, M., Spólnicka, M., Pośpiech, E., Pepłońska, B., Zbieć-Piekarska, R., Ilkowski, J., ... & Skrzypczak, M. (2018).
Oxidative medicine and cellular longevity, 2018
Generalized Baum-Welch and Viterbi Algorithms Based on the Direct Dependency among Observations
Tabar, V. R., Plewczynski, D., & Fathipor, H.
Journal of the Iranian Statistical Society, 17(2)
Evidence of ER stress and UPR activation in patients with Brody disease and Brody syndrome
Guglielmi, V., Voermans, N. C., Oosterhof, A., Nowis, D., Engelen, B. G., Tomelleri, G., & Vattemi, G.
Neuropathology and Applied Neurobiology, 44(5), 533-536.
Emerging and threatening infectious diseases
Basu, S., & Plewczynski, D.
Briefings in Functional Genomics, 17(6)
Does a Conjugation Site Affect Transport of Vitamin B12–Peptide Nucleic Acid Conjugates into Bacterial Cells?
Wierzba, A. J., Maximova, K., Wincenciuk, A., Równicki, M., Wojciechowska, M., Nexø, E., . . . & Gryko, D.
Chemistry – A European Journal, 24(70)
Combining Rosetta with molecular dynamics (MD): A benchmark of the MD-based ensemble protein design
Ludwiczak, J., Jarmula, A., & Dunin-Horkawicz, S.
Journal of Structural Biology, 203(1), 54-61.
Combining (Non)linear Optical and Fluorescence Analysis of DiD To Enhance Lipid Phase Recognition
Osella, S., Meo, F. D., Murugan, N. A., Fabre, G., Ameloot, M., Trouillas, P., & Knippenberg, S
Journal of Chemical Theory and Computation, 14(10)
Certification of high-dimensional entanglement and Einstein-Podolsky-Rosen steering with cold atomic quantum memory
Mazelanik, M., Dąbrowski, M., Parniak, M., Leszczyński, A., Lipka, M., & Wasilewski, W.
Conference on Lasers and Electro-Optics
Antimicrobial synergy between mRNA targeted peptide nucleic acid and antibiotics in E. coli
Castillo, J. I., Równicki, M., Wojciechowska, M., & Trylska, J.
Bioorganic & Medicinal Chemistry Letters, 28(18)
Alternative data processing techniques for serial NMR experiments
Shchukina, A., Urbańczyk, M., Kasprzak, P., & Kazimierczuk, K.
Concepts in Magnetic Resonance Part A, 46A(2)
Affinity, kinetics, and pathways of anisotropic ligands binding to hydrophobic model pockets
Weiß, R. G., Chudoba, R., Setny, P., & Dzubiella, J.
The Journal of Chemical Physics, 149(9)
5′-Phosphorothiolate Dinucleotide Cap Analogues: Reagents for Messenger RNA Modification and Potent Small-Molecular Inhibitors of Decapping Enzymes
Wojtczak, B. A., Sikorski, P. J., Fac-Dabrowska, K., Nowicka, A., Warminski, M., Kubacka, D., . . .& Jemielity, J.
Journal of the American Chemical Society, 140(18)
1392 Activation of Id2 gene regulatory network ruling quiescence of hair follicle stem cells
Wang, X., Wang, G., Ramos, R., Wang, X., Daszczuk, P., Mazurek, P., . . . & Kobielak, K.
Journal of Investigative Dermatology, 138(5)
Patterns of Midichloria infection in avian-borne African ticks and their trans-Saharan migratory hosts
Di Lecce, I., Bazzocchi, Ch., Cecere, J. G., Epis, S. (2018)
Parasites & Vectors, 11(1)
Classification, substrate specificity and structural features of D-2-hydroxyacid dehydrogenases: 2HADH knowledgebase
Matelska, D, Shabalin, I. G., Jablonska, J. (2018)
BMC Evolutionary Biology, 18(1)
Structure and Electromagnetic Properties of Cellular Glassy Carbon Monoliths with Controlled Cell Size
Szczurek, A., Fierro, V., Plyushch, A., Macutkevic, J. (2018)
Materials, 11(5), 709
On the position of helium and neon in the Periodic Table of Elements
Grochala, W. (2018)
Foundations of Chemistry, 20(3)
High-temperature superconductivity as viewed from the maximum hardness principle
Grochala, W., Derzsi, M. (2018)
Journal of Molecular Modelling, 24 (9)
Corrosion of Hydrogen Storage Metal Alloy LaMm-Ni4.1Al0.3Mn0.4Co0.45 in the Aqueous Solutions of Alkali Metal Hydroxides
Karwowska, M., Fijalkowski, K., Czerwinski, A. (2018)
Materials, 11(12), 2423
Bezafibrate Upregulates Mitochondrial Biogenesis and Influence Neural Differentiation of Human-Induced Pluripotent Stem Cells
Augustyniak, J., Lenart, J., Gaj, P., Jazdzewski, K., Stepien, P. P., Buzanska, L. (2018)
Molecular Neurobiology
Allylation of Orthoquinones Towards Annulated Polycyclic Aromatic Systems
Kedziorek, M., Dobrzanska, L. (2018)
Molecules, 23(8), 2043
Ideal free distribution of Daphnia under predation risk—model predictions and experimental verification
Maszczyk, P., Babkiewicz, E., Czarnocka-Cieciura, M., Gliwicz, M. Z., Uchmanski, J., Urban, P. (2018)
Journal of Plankton Research, 40(4), 471-485
Dominant ELOVL1 mutation causes neurological disorder with ichthyotic keratoderma, spasticity, hypomyelination and dysmorphic features
Kutkowska-Kazmierczak, A., Rydzanicz, M., Chlebowski, A. (2018)
Journal of Medical Genetics
Genus trace reveals the topological complexity and domain structure of biomolecules
Zając, S., Geary, C., Andersen, E. S., Dabrowski-Tumanski, P., Sulkowska, J. I., & Sułkowski, P.
Scientific Reports, 8(1)
Artificial Activation of Escherichia coli mazEF and hipBA Toxin–Antitoxin Systems by Antisense Peptide Nucleic Acids as an Antibacterial Strategy
Równicki, M., Pieńko, T., Czarnecki, J., Kolanowska, M., Bartosik, D., & Trylska, J.
Frontiers in Microbiology, 9
Molecular mechanisms for dynamic regulation of N1 riboswitch by aminoglycosides
Kulik, M., Takaharu, M., Sugita, Y., Trylska, J. (2018)
Nucleic Acids Research
The influence of the cationic carbenes on the initiation kinetics of ruthenium-based metathesis catalysts; a DFT study
Jawiczuk, M., Janaszkiewicz, A., Trzaskowski, B. (2018)
Beilstein Journal of Organic Chemistry, 14, 2872-2880
Assessing the Charge Transfer at the Cytochrome c 553 /Graphene Interface: A Multiscale Investigation
Kowalska, A. M., Trzaskowski, B., Osella, S. (2018)
The Journal of Physical Chemistry C. 122(51), 29405-29413
Comprehensive Mapping of Histone Modifications at DNA Double-Strand Breaks Deciphers Repair Pathway Chromatin Signatures
Clouaire, T., Rocher, V., Lashgari, A. ... & Legube, G. (2018)
Molecular Cell, 72(2), 250-262.e6
i-BLESS is an ultra-sensitive method for detection of DNA double-strand breaks
Biernacka, A., Zhu, Y., Skrzypczak, M. ... & Ginalski, K. (2018)
Communications Biology, 1(1)
Exome scale map of genetic alterations promoting metastasis in colorectal cancer
Goryca, K., Kulecka, M., Paziewska, A. ... & Ostrowski, J. (2019)
BMC Genetics, 19(1)
Predicting proteome dynamics using gene expression data
Kuchta, K., Towpik, J., Biernacka, A., Kutner, J., Kudlicki, A., Ginalski, K., & Rowicka, M.
Scientific Reports, 8(1)
Comparative genomic analysis of Staphylococcus lugdunensis shows a closed pan-genome and multiple barriers to horizontal gene transfer
Argemi, X., Matelska, D., Ginalski, K., Riegel, P., Hansmann, Y., Bloom, J., . . . Prévost, G.
BMC Genomics, 19(1)
Impact of selected amino acids of HP0377 (Helicobacter pylori thiol oxidoreductase) on its functioning as a CcmG (cytochrome c maturation) protein and Dsb (disulfide bond) isomerase
Grzeszczuk, M. J., Bąk, A., Banaś, A. M., Urbanowicz, P., Dunin-Horkawicz, S., Gieldon, A., . . . & Jagusztyn-Krynicka, E. K.
PLOS ONE, 13(4), e0195358
Probing the M–C NHC Bond and Its Effect on the Synthesis, Structure, and Reactivity of R 2 MOR(NHC) (M = Al, Ga, In) Complexes
Zaremba, R., Dranka, M., Trzaskowski, B., Checinska, L., Horeglad, P.
Organometallics, 37 (24), 4585-4598
Rapid, experience-dependent translation of neurogranin enables memory encoding
Jones, K., J., Templet, S., Zemoura, K., Kuzniewska, B., ... & Dziembowska, M. (2018)
Proceedings of the National Academy of Sciences, 115(15), E5805-E5814
Feasibility of quantum fingerprinting using optical signals with random global phase
Banaszek, K. Lipka, M. Jarzyna, M. Gruneisen, M. T. Dusek, M. Rarity, J. G. (2018).
Proceedings Volume 10803, Quantum Information Science and Technology IV
Range dependence of an optical pulse position modulation link in the presence of background noise
Zwolinski, W. Jarzyna, M. Banaszek, K. (2018).
Optics Express, 26 (20), 25827
Beating the Rayleigh Limit Using Two-Photon Interference
Parniak, M. Borowka, S. Boroszko, K. Wasilewski, W. Banaszek, K. Demkowicz-Dobrzanski, R. (2018).
Physical Review Letters, 121 (25)
Enhanced Photocatalytic Water Splitting on Very Thin WO3 Films Activated by High-Temperature Annealing
Jelinska, A. Bienkowski, K. Jadwiszczak, M. Pisarek, M. Strawski, M. Kurzydlowski, D. Solarska, R. & Augustynski, J. (2018).
ACS Catalysis, 8 (11), 10573-10580
Nicotinamide-Containing Di- and Trinucleotides as Chemical Tools for Studies of NAD-Capped RNAs
Mlynarska-Cieslak, A., Depaix, A., Grudzien-Nogalska, E., Sikorski, P. J., Warminski, M., Kiledjian, M., ... & Kowalska, J. (2018).
Organic letters.
LDL dinitrosyl iron complex acts as an iron donor in mouse macrophages
Lewandowska, H., Stępkowski, T. M., Męczyńska-Wielgosz, S., Sikorska, K., Sadło, J., Dudek, J., & Kruszewski, M. (2018).
Journal of inorganic biochemistry, 188, 29-37
Water-mediated conformational preselection mechanism in substrate binding cooperativity to protein kinase A
Setny, P., & Wiśniewska, M. D. (2018).
Proceedings of the National Academy of Sciences, 115(15), 3852-3857.
Exploring Eukaryotic Versus Prokaryotic Ribosomal RNA Recognition with Aminoglycoside Derivatives
Sabbavarapu, N. M., Pieńko, T., Zalman, B. H., Trylska, J., & Baasov, T. (2018).
MedChemComm, 9(3), 503-508.
Loss of the Mia40a oxidoreductase leads to hepato-pancreatic insufficiency in zebrafish
Sokol, A. M., Uszczynska-Ratajczak, B., Collins, M. M., Bazala, M., Topf, U.,.... & Chacinska, A. (2018).
PLoS Genetics
Neuroligin 1, 2, and 3 Regulation at the Synapse: FMRP-Dependent Translation and Activity-Induced Proteolytic Cleavage
Chmielewska, J. J., Kuzniewska, B., Milek, J., Urbanska, K., & Dziembowska, M. (2018).
Molecular neurobiology, 1-19
Neurodevelopmental phenotype caused by a de novo PTPN4 single nucleotide variant disrupting protein localization in neuronal dendritic spines
Szczałuba, K., Chmielewska, J. J., Sokolowska, O., Rydzanicz, M., Szymańska, K., Feleszko, W., ... & Bargeł, E. (2018).
Clinical genetics
The level of microRNA 21 is upregulated by rapamycin in serum of tuberous sclerosis complex patients and subependymal giant cell astrocytoma (SEGA)-derived cell cultures
Kuzniewska, B., Sadowski, K., Urbanska, K., Urbanska, M., Kotulska, K., Liszewska, E., ... & Dziembowska, M. (2018).
Folia Neuropathologica, 56(3), 167-174
Long term effects of superoxide and DNA repair on lizard telomeres
Olsson, M., Friesen, C. R., Rollings, N., Sudyka, J., Lindsay, W., Whittingtion, C. M., & Wilson, M. (2018).
Molecular ecology, 27 (24), 5154-5164.
mRNAs biotinylated within the 50 cap and protected against decapping: new tools to capture RNA – protein complexes
Bednarek, S., Madan, V., Sikorski, P. J., Bartenschlage, R., Kowalska, J., & Jemielity, J. (2018).
Philosophical Transactions of The Royal Society B, 373
Visibility-based hypothesis testing using higher-order optical interference
Jachura, M., Jarzyna, M., Lipka, M., Wasilewski, W., & Banaszek, K. (2018).
Physical review letters, 120(11), 110502.
Enhanced photoelectrochemical CO2-reduction system based on mixed Cu2O–nonstoichiometric TiO2 photocathode
Szaniawska, E., Bienkowski, K., Rutkowska, I. A., Kulesza, P. J., & Solarska, R. (2018).
Catalysis Today, 300, 145-151.
Motor recruitment to the TIM23 channel’s lateral gate restricts polypeptide release into the inner membrane
Schendzielorz, A. B., Bragoszewski, P., Naumenko, N., Gomkale, R., Schulz, C., Guiard, B., ... & Rehling, P. (2018).
Nature communications, 9(1), 4028
ExciTides: NTP-derived probes for monitoring pyrophosphatase activity based on excimer-to-monomer transitions
Wanat, P., Kasprzyk, R., Kopcial, M., Sikorski, P. J., Strzelecka, D., Jemielity, J., & Kowalska, J. (2018).
Chemical Communications, 54(70), 9773-9776
5′-Phosphorothiolate Dinucleotide Cap Analogues: Reagents for Messenger RNA Modification and Potent Small-Molecular Inhibitors of Decapping Enzymes
Wojtczak, B. A., Sikorski, P. J., Fac-Dabrowska, K., Nowicka, A., Warminski, M., Kubacka, D., ... & Jemielity, J. (2018).
Journal of the American Chemical Society, 140(18), 5987-5999
Exploring the potential of phosphotriazole 5′ mRNA cap analogues as efficient translation initiators
Walczak, S., Sikorski, P. J., Kasprzyk, R., Kowalska, J., & Jemielity, J. (2018).
Organic & biomolecular chemistry, 16(36), 6741-6748
Roquin targets mRNAs in a 3′-UTR-specific manner by different modes of regulation
Essig, K., Kronbeck, N., Guimaraes, J. C., Lohs, C., Schlundt, A., Hoffmann, A., ... & Jemielity, J. (2018).
Nature communications, 9
A Stable Crystalline Copper(I)–N2O Complex Stabilized as the Salt of a Weakly Coordinating Anion
V. Zhuravlev, P. J. Malinowski (2018).
Angewandte Chemie International Edition, 57(36), 11697-11700.
Energy Level Alignment at Interfaces Between Au (111) and Thiolated Oligophenylenes of Increasing Chain Size: Theoretical Evidence of Pinning Effects
Diez‐Cabanes, V., Gonzalez, S. R., Osella, S., Cornil, D., Van Dyck, C., & Cornil, J. (2018).
Advanced Theory and Simulations, 1(3), 1700020
Large sensitivity in land carbon storage due to geographical and temporal variation in the thermal response of photosynthetic capacity
Mercado, L. M., Medlyn, B. E., Huntingford, C., Oliver, R. J., Clark, D. B., Sitch, S., ... & Cox, P. M. (2018).
New Phytologist, 218(4), 1462-1477
Human-mediated dispersal of cats in the Neolithic Central Europe
Baca, M., Popović, D., Panagiotopoulou, H., Marciszak, A., Krajcarz, M., Krajcarz, M. T., ... & Nadachowski, A. (2018).
Heredity, 1
Identification of prion protein-derived peptides of potential use in Alzheimer’s disease therapy
Nieznanska, H., Bandyszewska, M., Surewicz, K., Zajkowski, T., Surewicz, W. K., & Nieznanski, K. (2018).
Biochimica et Biophysica Acta (BBA)-Molecular Basis of Disease, 1864(6), 2143-2153
Ruthenium Olefin Metathesis Catalysts Systematically Modified in Chelating Benzylidene Ether Fragment: Experiment and Computations
Grela, K., Zieliński, A., Szczepaniak, G., Gajda, R., Woźniak, K., Trzaskowski, B., ... & Kajetanowicz, A. (2018).
European Journal of Inorganic Chemistry
Thermodynamics of the pseudo‐knot in helix 18 of 16S ribosomal RNA
Wojciechowska, M., Dudek, M., & Trylska, J. (2018).
Biopolymers, 109(4), e23116
Improved Force Fields for Peptide Nucleic Acids with Optimized Backbone Torsion Parameters
Jasiński, M., Feig, M., & Trylska, J. (2018).
Journal of chemical theory and computation
Molecular dynamics simulations suggest why the A2058G mutation in 23S RNA results in bacterial resistance against clindamycin
Kulczycka-Mierzejewska, K., Sadlej, J., & Trylska, J. (2018).
Journal of molecular modeling, 24(8), 191
GapRepairer–a server to model a structural gap and validate it using topological analysis
Jarmolinska, A. I., Kadlof, M., Dabrowski-Tumanski, P., & Sulkowska, J. I. (2018).
Bioinformatics, 1, 8
KnotGenome: a server to analyze entanglements of chromosomes
Sulkowska, J. I., Niewieczerzal, S., Jarmolinska, A. I., Siebert, J. T., Virnau, P., & Niemyska, W. (2018).
Nucleic acids research
Charged N-terminus of Influenza Fusion Peptide Facilitates Membrane Fusion
Worch, R., Dudek, A., Krupa, J., Szymaniec, A., & Setny, P. (2018).
International journal of molecular sciences, 19(2), 578
Water-mediated conformational preselection mechanism in substrate binding cooperativity to protein kinase A
Setny, P., & Wiśniewska, M. D. (2018).
A. Proceedings of the National Academy of Sciences, 115(15), 3852-3857
Quantitative 3-D morphometric analysis of individual dendritic spines
Basu, S., Saha, P. K., Roszkowska, M., Magnowska, M., Baczynska, E., Das, N., ... & Wlodarczyk, J. (2018).
Scientific reports, 8(1), 3545
Three-dimensional Epigenome Statistical Model: Genome-wide Chromatin Looping Prediction
Al Bkhetan, Z., & Plewczynski, D. (2018).
Scientific reports, 8(1), 5217
Inhibition of protein disulfide isomerase induces differentiation of acute myeloid leukemia cells
Chlebowska-Tuz, J., Sokolowska, O., Gaj, P., Lazniewski, M., Firczuk, M., Borowiec, K., ... & Ramji, K. (2018).
Haematologica, 103(11), 1843-1852.
Compressed Sampling in NMR spectroscopy
Kazimierczuk, K. (2018).
eMagRes, 1-8
SCoT: Swept coherence transfer for quantitative heteronuclear 2D NMR
Gołowicz, D., Urbańczyk, M., Shchukina, A., & Kazimierczuk, K. (2018).
Journal of Magnetic Resonance, 294, 1-6.
Structure of the activated Edc1-Dcp1-Dcp2-Edc3 mRNA decapping complex with substrate analog poised for catalysis
Mugridge, J. S., Tibble, R. W., Ziemniak, M., Jemielity, J., & Gross, J. D. (2018).
Nature communications, 9(1), 1152
MicroRNA Analysis Using the Quantitative Real-Time PCR Reaction
Kotlarek, M., Kubiak, A., Jażdżewski, K., & Wójcicka, A. (2018).
In miRNA Biogenesis (pp. 69-85). Springer, New York, NY
MicroRNA Analysis Using Next-Generation Sequencing
Kolanowska, M., Kubiak, A., Jażdżewski, K., & Wójcicka, A. (2018).
In miRNA Biogenesis (pp. 87-101)
The rs2910164 Genetic Variant of miR-146a-3p Is Associated with Increased Overall Mortality in Patients with Follicular Variant Papillary Thyroid Carcinoma
Kotlarek, M., Kubiak, A., Czetwertyńska, M., Świerniak, M., Gierlikowski, W., Kolanowska, M., ... & Wójcicka, A. (2018).
International journal of molecular sciences 19, no. 3 (2018): 655
Silverland: the Realm of Compounds of Divalent Silver-and Why They are Interesting
Grochala, W. (2018).
Journal of Superconductivity and Novel Magnetism, 31(3), 737-752
New hydrogen-rich ammonium metal borohydrides, NH 4 [M (BH 4) 4], M= Y, Sc, Al, as potential H 2 sources
Starobrat, A., Jaroń, T., & Grochala, W. (2018).
Dalton Transactions, 47(13), 4442-4448
PDBsum: Structural summaries of PDB entries
Laskowski, R. A., Jabłońska, J., Pravda, L., Vařeková, R. S., & Thornton, J. M. (2018).
Protein Science, 27(1), 129-134
Dramatic enhancement of spin–spin coupling and quenching of magnetic dimensionality in compressed silver difluoride
Kurzydłowski, D., Derzsi, M., Barone, P., Grzelak, A., Struzhkin, V., Lorenzana, J., & Grochala, W. (2018).
Chemical Communications, 54(73), 10252-10255.
Predicting double-strand DNA breaks using epigenome marks or DNA at kilobase resolution
Mourad, R., Ginalski, K., Legube, G., & Cuvier, O. (2018).
Genome biology, 19(1), 34
Hydrolytic activity of human Nudt16 enzyme towards dinucleotide cap analogs and short capped oligonucleotides
Grzela, R., Nasilowska, K., Lukaszewicz, M., Tyras, M., Stepinski, J., Jankowska-Anyszka, M., ... & Darzynkiewicz, E.(2018).
RNA, rna-065698
Modified ARCA analogs providing enhanced translational properties of capped mRNAs
Kocmik, I., Piecyk, K., Rudzinska, M., Niedzwiecka, A., Darzynkiewicz, E., Grzela, R., & Jankowska-Anyszka, M. (2018).
Cell Cycle
Mitochondrial protein import stress and signaling
Samluk, L., Chroscicki, P., & Chacinska, A. (2018).
Current Opinion in Physiology
Optimizing deep-space optical communication under power constraints
Jarzyna, M., Zwoliński, W., Jachura, M., & Banaszek, K. (2018).
In Free-Space Laser Communication and Atmospheric Propagation XXX (Vol. 10524, p. 105240A)
The usability of the optical parametric amplification of light for high-angular-resolution imaging and fast astrometry
Kurek, A. R., Stachowski, A., Banaszek, K., & Pollo, A. (2018).
Monthly Notices of the Royal Astronomical Society, 476(2), 1696-1704
Enhanced photoelectrochemical CO2-reduction system based on mixed Cu2O–nonstoichiometric TiO2 photocathode
Szaniawska, E., Bienkowski, K., Rutkowska, I. A., Kulesza, P. J., & Solarska, R. (2018).
Catalysis Today, 300, 145-151
Determinants of the cytosolic turnover of mitochondrial intermembrane space proteins
Kowalski L, Bragoszewski P, Khmelinskii A, Glow E, Knop M, Chacinska A. (2018).
BMC Biol. 2018 Jun 22;16(1):66. doi: 10.1186/s12915-018-0536-1.
Controlling the charge transfer flow at the graphene/pyrene-nitrilotriacetic acid interface
Osella S*, Kiliszek M, Harputlu E, Unlu CG, Ocakoglu K, Kargul J*, Trzaskowski B (2018).
J. Mater. Chem. C. 6, 5046-5054
Noisy propagation of coherent states in a lossy Kerr medium
Kunz, L., Paris, M. G., & Banaszek, K. (2018).
JOSA B, 35(2), 214-222.
Altered expression of GABA-A receptor subunits in the hippocampus of PTZ-kindled rats
Szyndler, J., Maciejak, P., Kołosowska, K., Chmielewska, N., Skórzewska, A., Daszczuk, P., & Płaźnik, A. (2018).
Pharmacological Reports, 70(1), 14-21.
Great tits and the city: Distribution of genomic diversity and gene–environment associations along an urbanization gradient
Perrier, C., Lozano del Campo, A., Szulkin, M., Demeyrier, V., Gregoire, A., & Charmantier, A.
Evolutionary Applications. 2018
Climate pattern-scaling set for an ensemble of 22 GCMs – adding uncertainty to the IMOGEN version 2.0 impact system
Zelazowski, P., Huntingford, C., Mercado, L. M., & Schaller, N. (2018).
Geoscientific Model Development, 11(2), 541.
Interactions of 2′-O-methyl oligoribonucleotides with the RNA models of the 30S subunit A-site
Jasiński, M., Kulik, M., Wojciechowska, M., Stolarski, R., & Trylska, J. (2018).
PloS one, 13(1), e0191138
Structural, Biochemical, and Evolutionary Characterizations of Glyoxylate/Hydroxypyruvate Reductases Show Their Division into Two Distinct Subfamilies
Kutner, J., Shabalin, I. G., Matelska, D., Handing, K. B., Gasiorowska, O., Sroka, P., ... & Minor, W. (2018).
Biochemistry, 57(6), 963-977.
Clinical and molecular characteristics of newly reported mitochondrial disease entity caused by biallelic PARS2 mutations
Ciara, E., Rokicki, D., Lazniewski, M., Mierzewska, H., Jurkiewicz, E., Bekiesińska-Figatowska, M., ... & Kosińska, J. (2018).
Journal of human genetics, 63(4), 473.
Overactive BRCA1 Affects Presenilin 1 in Induced Pluripotent Stem Cell-Derived Neurons in Alzheimer’s Disease
Wezyk, M., Szybinska, A., Wojsiat, J., Szczerba, M., Day, K., Ronnholm, H., ... & Ilkowski, J. (2018).
Journal of Alzheimer's Disease, 62(1), 175-202.
7-Methylguanosine monophosphate analogues with 5′-(1,2,3-triazoyl) moiety: Synthesis and evaluation as the inhibitors of cNIIIB nucleotidase
Kozarski, M., Kubacka, D., Wojtczak, B. A., Kasprzyk, R., Baranowski, M. R., & Kowalska, J. (2018).
Bioorganic & medicinal chemistry, 26(1), 191-199.
5-HT1A and 5-HT2A receptors affinity, docking studies and pharmacological evaluation of a series of 8-acetyl-7-hydroxy-4-methylcoumarin derivatives
Ostrowska, K., Grzeszczuk, D., Głuch-Lutwin, M., Gryboś, A., Siwek, A., Leśniak, A., ... & Trzaskowski, B. (2018).
Bioorganic & medicinal chemistry, 26(2), 527-535.
Efficient glycosylation of natural Danshensu and its enantiomer by sugar and 2-deoxy sugar donors
Sidoryk, K., Cmoch, P., Świtalska, M., Trzaskowski, B., Wietrzyk, J., & Cybulski, M. (2018).
Carbohydrate research, 460, 19-28.
Azoliniums, Adducts, NHCs and Azomethine Ylides: Divergence in Wanzlick Equilibrium and Olefin Metathesis Catalyst Formation
Jolly, P. I., Marczyk, A., Małecki, P., Ablialimov, O., Trzybiński, D., Woźniak, K., ... & Grela, K. (2018).
Chemistry-A European Journal.
Probing the effect of six-membered N-heterocyclic carbene—6-Mes—on the synthesis, structure and reactivity of Me2MOR (NHC)(M= Ga, In) complexes
Cybularczyk-Cecotka, M., Dąbrowska, A. M., Guńka, P. A., & Horeglad, P. (2018).
Inorganics, 6(1), 28.
Mechanistic Insight into Enantioselective Palladium-Catalyzed Oxidative Carbocyclization-Borylation of Enallenes
Qiu, Y., Mendoza, A., Posevins, D., Himo, F., Kalek, M., & Bäckvall, J. E. (2018).
Chemistry-A European Journal, 24(10), 2433-2439.
Biophotovoltaic Systems Based on Photosynthetic Complexes
Kargul, J., Bubak, G., & Andryianau, G. (2018).
In: Wandelt, K., (Ed.) Encyclopedia of Interfacial Chemistry: Surface Science and Electrochemistry, vol. 7, pp 43–63. (book chapter).
Molecular Mechanisms of Photoadaptation of Photosystem I Supercomplex from an Evolutionary Cyanobacterial/Algal Intermediate
Haniewicz P., Abram M., Nosek L., Kirkpatrick J., El-Mohsnawy E., Janna Olmos J., Kouril R., Kargul J.* (2018).
Plant Physiol., 176, 1433–1451.
d-Peptides as inhibitors of PR3-membrane interactions
Maximova, K., Venken, T., Reuter, N. and Trylska, J., (2018).
Biochimica et Biophysica Acta (BBA)-Biomembranes, 1860(2), pp.458-466.
Exploring Eukaryotic Versus Prokaryotic Ribosomal RNA Recognition with Aminoglycoside Derivatives
Sabbavarapu, N. M., Pieńko, T., Zalman, B. H., Trylska, J., & Baasov, T. (2018).
MedChemComm, 9(3), 503-508.
Preparation of polysomal fractions from mouse brain synaptoneurosomes and analysis of polysomal-bound mRNAs
Kuzniewska, B., Chojnacka, M., Milek, J., & Dziembowska, M., (2018).
Journal of neuroscience methods, 293, 226-233.
Risk and Surrogate Benefit for Pediatric Phase 1 Trials in Oncology: A Systematic Review with Meta-analysis
Waligora, M., Bala, M. M., Koperny, M., Wasylewski, M.T., Strzebonska, K., Jaeschke, R.R., Wozniak, A., Piasecki, J., Sliwka, A., Mitus, J. W., Polak, M., Nowis, D., Fergusson, D., Kimmelman, J. (2018).
PLoS medicine, 15(2), e1002505.
Quantitative proteomics identifies redox switches for global translation modulation by mitochondrially produced reactive oxygen species
Topf, U., Suppanz, I., Samluk, L., Wrobel, L., Böser, A., Sakowska, P., Knapp, B., Pietrzyk, M.K., Chacinska, A. and Warscheid, B. (2018).
Nature Communications, 9(1), p.324.
STING Signaling in Cancer Cells: Important or Not?
Sokolowska, O. and Nowis, D.
Archivum immunologiae et therapiae experimentalis, pp.1-8.