Efficient Assessment of Developmental, Surgical and Pathological Lymphangiogenesis Using a Lymphatic Reporter Mouse and Its Embryonic Stem Cells.
Hong M., Jung E., Yang S., Jung W., Seong YJ., Park E., Bramos A., Kim KE., Lee S., Daghlian G., Seo JI., Choi I., Choi IS., Koh CJ., Kobielak A., Ying QL., Johnson M., Gardner D., Wong AK., Choi D., Hong YK.,
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Analysis of Structural Chromosome Variants by Next Generation Sequencing Methods
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miR-132 Regulates Dendritic Spine Structure by Direct Targeting of Matrix Metalloproteinase 9 mRNA
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Molecular Neurobiology, 53(7), 4701-4712.
Highly Efficient and Stable Solar Water Splitting at (Na) WO3 Photoanodes in Acidic Electrolyte Assisted by Non‐Noble Metal Oxygen Evolution Catalyst.
Sarnowska, M., Bienkowski, K., Barczuk, P. J., Solarska, R., & Augustynski, J. (2016).
Advanced Energy Materials, 6(14), 1600526.
Computational Approach to Dendritic Spine Taxonomy and Shape Transition Analysis
Bokota, G., Magnowska, M., Kuśmierczyk, T., Łukasik, M., Roszkowska, M., & Plewczynski, D. (2016)
Frontiers in computational neuroscience, 10, 140
3DFlu: database of sequence and structural variability of the influenza hemagglutinin at population scale
Mazzocco, G., Lazniewski, M., Migdał, P., Szczepińska, T., Radomski, J. P., & Plewczynski, D.
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Retreat and extinction of the Late Pleistocene cave bear (Ursus spelaeus sensu lato)
Baca, M., Popović, D., Stefaniak, K., Marciszak, A., Urbanowski, M., Nadachowski, A., & Mackiewicz, P. (2016)
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Complex lasso: new entangled motifs in proteins
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Kinetic and solvent isotope effects on biotransformation of aromatic amino acids and their derivatives
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Journal of Labelled Compounds and Radiopharmaceuticals, 59(14), 627-634.
Genome-wide co-localization of active EGFR and downstream ERK pathway kinases mirrors mitogen-inducible RNA polymerase 2 genomic occupancy
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Towards engineering novel PE-based immunotoxins by targeting them to the nucleus
Borowiec, M., Gorzkiewicz, M., Grzesik, J., Walczak-Drzewiecka, A., Salkowska, A., Rodakowska, E., ... & Ginalski, K. (2016).
Toxins, 8(11), 321.
Effect of In-CNHC bonds on the synthesis, structure, and reactivity of dialkylindium alkoxides: How indium compares to gallium
Cybularczyk, M., Dranka, M., Zachara, J., & Horeglad, P. (2016)
Organometallics, 35(19), 3311-3322
Roadmap on optical metamaterials
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Journal of Optics, 18(9), 093005
Single Particle Nanoplasmonic Sensing in Individual Nanofluidic Channels
Zengin, G., Gschneidtner, T., Verre, R., Shao, L., Antosiewicz, T. J., Moth-Poulsen, K., ... & Shegai, T. (2016).
The Journal of Physical Chemistry C, 120(37), 20588-20596.
Evaluating Conditions for Strong Coupling between Nanoparticle Plasmons and Organic Dyes Using Scattering and Absorption Spectroscopy
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The Journal of Physical Chemistry C, 120(37), 20588-20596.
Ag2S2O8 meets AgSO4: the second example of metal-ligand redox isomerism among inorganic systems
Gilewski, T. E., Leszczyński, P. J., Budzianowski, A., Mazej, Z., Grzelak, A., Jaroń, T., & Grochala, W. (2016).
Dalton Transactions, 45(45), 18202-18207.
Organic derivatives of Mg(BH4)2 as precursors towards MgB2 and novel inorganic mixed-cation borohydrides
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Dalton Transactions, 45(36), 14370-14377.
Crystal, electronic, and magentic structures of M2AgF4 (M=Na-Cs) phases as viewed from the DFT+U method
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Dalton Transactions, 45(41), 16255-16261.
Local and cooperative Jahn-Teller effect and resultant magnetic properties of M2AgF4 (M=Na-Cs) phases
Kurzydłowski, D., Jaroń, T., Ozarowski, A., Hill, S., Jagličić, Z., Filinchuk, Y., ... & Grochala, W. (2016).
Properties of M2AgF4 (M= Na–Cs) Phases. Inorganic chemistry, 55(21), 11479-11489.
Depth of formation of CaSiO3 – walstromite included in super-deep diamonds
Anzolini, C., Angel, R. J., Merlini, M., Derzsi, M., Tokár, K., Milani, S., ... & Harris, J. W. (2016).
Lithos, 265, 138-147.
Methyl Transfer by Substrate Signaling from a Knotted Protein Fold
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2dSpAn: Semiautomated 2-d segmentation, classification and analysis of hippocampal dendritic spine plasticity
Basu, S., Plewczynski, D., Saha, S., Roszkowska, M., Magnowska, M., Baczynska, E., & Wlodarczyk, J. (2016).
Bioinformatics, 32(16), 2490-2498.
Unfolding the mechanism of the AAA+ unfoldase VAT by a combined cryo-EM, solution NMR study
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Proceedings of the National Academy of Sciences, 113(29), E4190-E4199.
Canted Antiferromagnetism in Two-Dimensional Silver (II) Bis [pentafluoridooxidotungstate (VI)].
Mazej, Z., Gilewski, T., Goreshnik, E. A., Jagličić, Z., Derzsi, M., & Grochala, W. (2016).
Inorganic chemistry, 56(1), 224-233.
Controlling the stereoselectivity of rac-LA polymerization by chiral recognition induced the formation of homochiral dimeric metal alkoxides.
Horeglad, P., Cybularczyk, M., Litwińska, A., Dąbrowska, A. M., Dranka, M., Żukowska, G. Z., M. Urbańczyk & Michalak, M. (2016)
Polymer Chemistry, 7(11), 2022-2036.
Effect of In–CNHC Bonds on the Synthesis, Structure, and Reactivity of Dialkylindium Alkoxides: How Indium Compares to Gallium.
Cybularczyk, M., Dranka, M., Zachara, J., & Horeglad, P. (2016).
Organometallics, 35(19), 3311-3322.
Efficient assessment of developmental, surgical and pathological lymphangiogenesis using a lymphatic reporter mouse and its embryonic stem cells.
Hong, M., Jung, E., Yang, S., Jung, W., Seong, Y.J., Park, E., Bramos, A., Kim, K.E., Lee, S., Daghlian, G. and Seo, J.I., (2016)
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MaER: A New Ensemble Based Multiclass Classifier for Binding Activity Prediction of HLA Class II Proteins
Mazzocco, G., Bhowmick, S. S., Saha, I., Maulik, U., Bhattacharjee, D., & Plewczynski, D., (2016)
International Conference on Pattern Recognition and Machine Intelligence (pp. 462-471). Springer, Cham
3D-GNOME: an integrated web service for structural modeling of the 3D genome.
Szalaj, P., Michalski, P. J., Wróblewski, P., Tang, Z., Kadlof, M., Mazzocco, G., ... & Plewczynski, D. (2016).
Nucleic acids research, 44(W1), W288-W293.
An integrated 3-dimensional genome modeling engine for data-driven simulation of spatial genome organization.
Szałaj, P., Tang, Z., Michalski, P., Pietal, M. J., Luo, O. J., Sadowski, M., ... & Plewczynski, D. (2016).
Genome research, 26(12), 1697-1709.
Efficient Electrosynthesis of AgIISO4: A Powerful Oxidizer and Narrow Band Gap Semiconductor.
Połczyński, P., Gilewski, T.E., Gawraczyński, J., Derzsi, M., Leszczyński, P.J., Gadomski, W., Mazej, Z., Jurczakowski, R. and Grochala, W., (2016.)
European Journal of Inorganic Chemistry, 2016(35), pp.5401-5404.
Molecular anatomy of the thalamic complex and the underlying transcription factors.
Nagalski, A., Puelles, L., Dabrowski, M., Wegierski, T., Kuznicki, J., & Wisniewska, M. B. (2016).
Brain Structure and Function, 221(5), 2493-2510.
The proline-rich region of glyceraldehyde-3-phosphate dehydrogenase from human sperm may bind SH3 domains, as revealed by a bioinformatic study of low-complexity protein segments
Tatjewski, M., Gruca, A., Plewczynski, D., & Grynberg, M. (2016)
Molecular reproduction and development, 83(2), 144-148.
Complete series of alkali metal M(BH3NH2BH2NH2BH3) hydrogen stores accessed via metathesis in organic solvents
Owarzany, R., Fijalkowski, K. J., Jaroń, T., Leszczyński, P. J., Dobrzycki, Ł., Cyrański, M. K., & Grochala, W.
Inorganic chemistry, 55(1), 37-45
Interferon γ (IFNγ)-Signaling via mTORC2 and Regulatory Effects in the Generation of Type II IFN Biological Responses
Kroczynska, B., Rafidi, R. L., Majchrzak-Kita, B., Kosciuczuk, E. M., Blyth, G. T., Jemielity, J., ... & Fish, E. N. (2016)
Journal of Biological Chemistry, jbc-M115
Detecting reliable non interacting proteins (NIPs) significantly enhancing the computational prediction of protein-protein interactions using machine learning methods
Srivastava, A., Mazzocco, G., Kel, A., Wyrwicz, L. S., & Plewczynski, D.
Molecular BioSystems, 12(3), 778-785
Clickable trimethylguanosine cap analogs modified within the triphosphate bridge: synthesis, conjugation to RNA and susceptibility to degradation
Wojtczak, B. A., Warminski, M., Kowalska, J., Lukaszewicz, M., Honcharenko, M., Smith, C. E., ... & Jemielity, J. (2016)
RSC Advances, 6(10), 8317-8328
Two-headed tetraphosphate cap analogs are inhibitors of the Dcp1/2 RNA decapping complex
Ziemniak, M., Mugridge, J. S., Kowalska, J., Rhoads, R. E., Gross, J. D., & Jemielity, J. (2016)
RNA, 22(4), 518-529
Controlling the stereoselectivity of rac-LA polymerization by chiral recognition induced formation of homochiral dimeric metal alkoxides
Horeglad, P., Cybularczyk, M., Litwińska, A., Dąbrowska, A. M., Dranka, M., Żukowska, G. Z., ... & Michalak, M. (2016)
Polymer Chemistry, 7(11), 2022-2036
Molecular recognition of mRNA 5′ cap by 3′ poly(A)-specific ribonuclease (PARN) differs from interactions known for other cap-binding proteins
Niedzwiecka, A., Nilsson, P., Worch, R., Stepinski, J., Darzynkiewicz, E., & Virtanen, A. (2016)
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics, 1864(4), 331-345
The diagnosis of nonclassic congenital adrenal hyperplasia due to 21-hydroxylase deficiency, based on serum basal or post-ACTH stimulation 17-hydroxyprogesterone, can lead to false-positive diagnosis
Ambroziak, U., Kępczyńska‐Nyk, A., Kuryłowicz, A., Małunowicz, E. M., Wójcicka, A., Miśkiewicz, P., & Macech, M. (2016)
Clinical endocrinology, 84(1), 23-29
Synthesis and structural study of a self-organized MnTiO3-TiO2 eutectic
Kolodziejak, K., Gajc, M., Sar, J., Diduszko, R., Rozniatowski, K., & Pawlak, D. A. (2016)
Journal of Alloys and Compounds, 659, 152-158.
Acetylpyrene-labelled 7-methylguanine nucleotides: unusual fluorescence properties and application to decapping scavenger activity monitoring.
Kasprzyk, R., Kowalska, J., Wieczorek, Z., Szabelski, M., Stolarski, R., & Jemielity, J. (2016).
Organic & biomolecular chemistry, 14(16), 3863-3868.
Amino acid recognition for automatic resonance assignment of intrinsically disordered proteins
Piai, A., Gonnelli, L., Felli, I. C., Pierattelli, R., Kazimierczuk, K., Grudziąż, K., ... & Zawadzka-Kazimierczuk, A. (2016)
Journal of biomolecular NMR, 64(3), 239-253
Geodesic arenes
Trzaskowski, B., Ostrowska, K., & Adamowicz, L. (2016).
Carbon Nanomaterials Sourcebook: Nanoparticles, Nanocapsules, Nanofibers, Nanoporous Structures, and Nanocomposites (pp. 115-139). CRC Press.
Solar-driven water oxidation and decoupled hydrogen production mediated by an electron-coupled-proton buffer.
Bloor, L. G., Solarska, R., Bienkowski, K., Kulesza, P. J., Augustynski, J., Symes, M. D., & Cronin, L. (2016).
Journal of the American Chemical Society, 138(21), 6707-6710.
Synthetic m 3 G-CAP attachment necessitates a minimum trinucleotide constituent to be recognised as a nuclear import signal.
Honcharenko, M., Bestas, B., Jezowska, M., Wojtczak, B. A., Moreno, P. M. D., Romanowska, J., Darzynkiewicz E., Jemielity J., ... & Strömberg, R. (2016).
RSC Advances, 6(56), 51367-51373.
FAM46 proteins are novel eukaryotic non-canonical poly (A) polymerases.
Kuchta, K., Muszewska, A., Knizewski, L., Steczkiewicz, K., Wyrwicz, L. S., Pawlowski, K., ... & Ginalski, K. (2016).
Nucleic acids research 44, no. 8 (2016): 3534-3548.
Family of microRNA-146 regulates RARβ in papillary thyroid carcinoma.
Czajka, A. A., Wójcicka, A., Kubiak, A., Kotlarek, M., Bakuła-Zalewska, E., Koperski, Ł., ... & Jażdżewski, K. (2016).
PloS one, 11(3), e0151968.
PDP-CON: prediction of domain/linker residues in protein sequences using a consensus approach.
Chatterjee, P., Basu, S., Zubek, J., Kundu, M., Nasipuri, M., & Plewczynski, D. (2016).
Journal of molecular modeling, 22(4), 72. Chicago
Diverse cap-binding properties of Drosophila eIF4E isoforms.
Zuberek, J., Kuchta, K., Hernández, G., Sonenberg, N., & Ginalski, K. (2016).
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics, 1864(10), 1292-1303.
A Novel Method for Gene-Specific Enhancement of Protein Translation by Targeting 5’UTRs of Selected Tumor Suppressors.
Master, A., Wójcicka, A., Giżewska, K., Popławski, P., Williams, G. R., & Nauman, A. (2016).
PloS one, 11(5), e0155359.
Synchronous genetic turnovers across Western Eurasia in Late Pleistocene collared lemmings.
Palkopoulou, E., Baca, M., Abramson, N. I., Sablin, M., Socha, P., Nadachowski, A., ... & Węgleński, P. (2016).
Global change biology, 22(5), 1710-1721.
Structural properties and the fluorite–pyrochlore phase transition in La2Zr2O7: The role of oxygen to induce local disordered states.
Paul, B., Singh, K., Jaroń, T., Roy, A. and Chowdhury, A., (2016).
Journal of Alloys and Compounds, 686, pp.130-136.
Synthesis, Biological Activity, and NMR‐Based Structural Studies of Deltorphin I Analogs Modified in Message Domain with a New α, α‐Disubstituted Glycines.
Lasota, A., Frączak, O., Muchowska, A., Nowakowski, M., Maciejczyk, M., Ejchart, A., & Olma, A. (2016).
Chemical biology & drug design, 87(6), 824-832.
Histone H1 variants in Arabidopsis are subject to numerous post-translational modifications, both conserved and previously unknown in histones, suggesting complex functions of H1 in plants.
Kotliński, M., Rutowicz, K., Kniżewski, Ł., Palusiński, A., Olędzki, J., Fogtman, A., ... & Jerzmanowski, A. (2016).
PloS one 11, no. 1 (2016): e0147908.
EXtended ACquisition Time (EXACT) NMR—A Case for′ Burst′ Non‐Uniform Sampling.
Ndukwe, I. E., Shchukina, A., Kazimierczuk, K., Cobas, C., & Butts, C. P. (2016).
ChemPhysChem, 17(18), 2799-2803.
Backbone Assignment of the MALT1 Paracaspase by Solution NMR.
Unnerståle, S., Nowakowski, M., Baraznenok, V., Stenberg, G., Lindberg, J., Mayzel, M., ... & Agback, T. (2016).
PloS one, 11(1), e0146496.
Cap analogs modified with 1, 2-dithiodiphosphate moiety protect mRNA from decapping and enhance its translational potential.
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Nucleic acids research, 44(20), 9578-9590.