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Karol Łukanowski, Marcin Jarzyna
IEEE TRANSACTIONS ON COMMUNICATIONS vol. 69, issue 8, 5059 (2021)
Sub-Rayleigh characterization of a binary source by spatially demultiplexed coherent detection
Chandan Datta, Yink Loong Len, Karol Łukanowski, Konrad Banaszek, Marcin Jarzyna
Optics Express 29, 35592-35601 (2021)
Anyonic Two-Photon Statistics with a Semiconductor Chip
Saverio Francesconi, Arnault Raymond, Nicolas Fabre, Aristide Lemaître, Maria I. Amanti, Perola Milman, Florent Baboux, Sara Ducci
ACS Photonics, 8(9), 2764-2769.
Optimization of intensity-modulation/direct-detection optical key distribution under passive eavesdropping
Konrad Banaszek, Michał Jachura, Piotr Kolenderski, Mikołaj Lasota
Optics Express 29, 43091-43103 (2021)
Insight into the Binding and Hydrolytic Preferences of hNudt16 Based on Nucleotide Diphosphate Substrates.
Magdalena Chrabąszczewska, Maria Winiewska-Szajewska, Natalia Ostrowska, Elżbieta Bojarska, Janusz Stępiński, Łukasz Mancewicz, Maciej Łukaszewicz, Joanna Trylska, Michał Taube, Maciej Kozak, Edward Darżynkiewicz, Renata Grzela
International Journal of Molecular Sciences, 22(20):10929
Upregulation of RNA cap methyltransferase RNMT drives ribosome biogenesis during T cell activation.
Alison Galloway, Aneesa Kaskar, Dimitrinka Ditsova, Abdelmadjid Atrih, Harunori Yoshikawa, Carolina Gomez-Moreira, Olga Suska, Marcin Warmiński, Renata Grzela, Angus I Lamond, Edward Darżynkiewicz, Jacek Jemielity, Victoria H Cowling
Nucleic Acids Research, 49(12): 6722–6738.
Stapled anoplin as an antibacterial agent
Monika Wojciechowska, Julia Macyszyn, Joanna Miszkiewicz, Renata Grzela, Joanna Trylska
Front. Microbiol., 13 December 2021
Revealing biophysical properties of KfrA-type proteins as a novel class of cytoskeletal, coiled-coil plasmid-encoded proteins
M. Adamczyk, E. Lewicka, R. Szatkowska, H. Nieznanska, J. Ludwiczak, M. Jasiński, S. Dunin-Horkawicz, E. Sitkiewicz, B. Swiderska, G. Goch, G. Jagura-Burdzy
BMC Microbiology volume 21, Article number: 32 (2021)
Rossmann-toolbox: a deep learning-based protocol for the prediction and design of cofactor specificity in Rossmann-fold proteins
Kamil Kamiński, Jan Ludwiczak, Maciej Jasiński, Adriana Bukala, Rafał Madaj, Krzysztof Szczepaniak, Stanisław Dunin-Horkawicz
Briefings in Bioinformatics, Volume 23, Issue 1, January 2022, bbab371,
Slipknotted and unknotted monovalent cation-proton antiporters evolved from a common ancestor.
Vasilina Zayats, Agata P. Perlińska, Aleksandra I. Jarmolińska, Borys Jastrzębski, Stanisław Dunin-Horkawicz, Joanna I. Sułkowska
PLoS Computational Biology, 17(10), e1009502.
Defect Trapping and Phase Separation in Chemically Doped Bulk AgF2
Adam Grzelak, Mariana Derzsi, Wojciech Grochala
Inorganic Chemistry, Vol. 60, pp. 1561–1570
Separation-Controlled Redox Reactions
Dr. Adam Grzelak, Dr. José Lorenzana, Prof. Wojciech Grochala
Angew. Chem. Int. Ed., Vol. 133, pp. 14011-14014
Fate of doped carriers in silver fluoride cuprate analogs
Subrahmanyam Bandaru, Mariana Derzsi, Adam Grzelak, José Lorenzana, and Wojciech Grochala
Phys. Rev. Materials Vol. 5, p. 064801
Theoretical study of ternary silver fluorides AgMF4 (M = Co, Ni, Cu) formation at pressures up to 20 GPa
Mateusz A. Domański, Mariana Derzsi, Wojciech Grochala
RSC ADVANCES, 11(41): 25801-25810 2021
Taming the dramatic redox reactions
Wojciech Grochala
Wiadomosci Chemiczne, 75(5-6): 755-769 2021
The fate of compound with AgF2 : AgO stoichiometry – a theoretical study
Mateusz A. Domański, Wojciech Grochala
J CHEM PHYS, 154(20): 204705 2021
“Polycyclic Aromatic Hydrocarbons and their Adducts with Solvents from Ag(II)SO4-Based Oxidative C-C Coupling “
P. J. Leszczyński, T. Jaroń, P. J. Malinowski, J. Gawraczyński, Z. Mazej, W. Grochala
POLYCYC AROMAT COMP, 41(4): 795-804 2021
Watch the colours – or about qualitative thinking in chemistry
Wojciech Grochala
FOUND CHEM 23(1): 41–58 2021
Fluorides of silver under high compression
Dr. Dominik Kurzydłowski, Dr. Mariana Derzsi, Prof. Eva Zurek, Prof. Wojciech Grochala
CHEM EUR J, 27(17): 5536–5545 2021
Lattice dynamics in KAgF3, unique 1D antiferromagnet
Kacper Koteras, Jakub Gawraczyński, Mariana Derzsi, Zoran Mazej, Wojciech Grochala
CHEMISTRY, 3(1): 94-103 2021
Pressure induced phase transitions
Wojciech Grochala
Chemical Reactivity in Confined Systems: Theory, Modelling and Applications, pp. 25–47
Thermal valorization and elemental composition of industrial tannin extracts
Michela Zanetti, Emanuele Cesprini, Matteo Marangon, Andrzej Szczurek, Gianluca Tondi
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Perspectives on Tannins (chapter)
Andrzej Szczurek
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Synthesis, polymorphism and thermal decomposition process of (N-C4H9)4NRE(BH4)4 for RE = Ho, Tm and Yb
Wojciech Wegner, Tomasz Jaroń
Materials Volume 14, Issue 62 Article number 1329
Incorporation of expanded organic cations in dysprosium(III) borohydrides for achieving luminescent molecular nanomagnets
Wojciech Wegner, Jakub J. Zakrzewski, Mikołaj Zychowicz, Szymon Chorąży
Scientific Reports, Vol. 11, Article number: 11354
Laser-induced crystallization and phase transitions of As2Se3 under high pressure
Tomasz Jaroń, Vitali B. Prakapenka, and Viktor V. Struzhkin
Phys Rev B, Volume 103, Issue 18 Article number 014103
Extending the chemistry of weakly basic ligands: solvates of Ag+and Cu+stabilized by [Al{OC(CF3)3}4]−anion as model examples in the screening of useful weakly interacting solvents
Przemysław J. Malinowski, Vadim Zhuravlev, Tomasz Jaroń, Gustavo Santiso-Quinonesb, Ingo Krossing
Dalton Trans, Volume 50, Issue 6, Pages 2050 - 2056
Enhanced activity of titanocene complex for electrocatalytic nitrogen reduction reaction
Karol J. Fijalkowski
Catalysts Volume 11, Issue 3, Pages 1 - 9 Article number 389
Superexchange interactions in AgMF4 (M = Co, Ni, Cu) polymorphs
Mateusz A. Domański, Wojciech Grochala
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Developments in Synthesis and Potential Electronic and Magnetic Applications of Pristine and Doped Graphynes
Gisya Abdi, Abdolhamid Alizadeh, Wojciech Grochala, Andrzej Szczurek
Nanomaterials 2021, 11, 2268
Observation of a new polyhalide phase in an Ag-Cl2 system at high pressure
Adam Grzelak, Jakub Gawraczyński, Mariana Derzsi, Viktor Struzhkin, Maddury Somayazulu, Wojciech Grochala
Crystals, 11(12), 1565
CXCR4/ACKR3/CXCL12 axis in the lymphatic metastasis of vulvar squamous cell carcinoma
Natalia Rusetska, Kamil Kowalski, Kamil Zalewski, Sebastian Zięba, Mariusz Bidziński, Krzysztof Goryca, Beata Kotowicz, Małgorzata Fuksiewicz, Janusz Kopczyński, Elwira Bakuła-Zalewska, Artur Kowalik, Magdalena Kowalewska
J Clin Pathol . 2022 May;75(5):324-332.
Circulating Hsa-miR-431-5p as Potential Biomarker for Squamous Cell Vulvar Carcinoma and Its Premalignant Lesions
Mateusz Bujko, Kamil Zalewski, Martyna Szczyrek, Artur Kowalik, Joanna Boresowicz, Angelika Długosz, Krzysztof Goryca, Stanisław Góźdź, Magdalena Kowalewska
Diagnostics 2021, 11(9), 1706
Phenotypic Variations of Mild-to-Moderate Obstructive Pulmonary Diseases According to Airway Inflammation and Clinical Features
Proboszcz M , Goryca K, Nejman-Gryz P, Przybyłowski T, Górska K, Krenke R , Paplińska-Goryca M
J Inflamm Res., Volume 2021:14 Pages 2793—2806
Higher EU-TIRADS-Score Correlated with BRAF V600E Positivity in the Early Stage of Papillary Thyroid Carcinoma
Karolina Skubisz, Joanna Januszkiewicz-Caulier, Patrycja Cybula, Elwira Bakuła-Zalewska, Krzysztof Goryca, Agnieszka Paziewska, Filip Ambrożkiewicz, Kosma Woliński, Michał Mikula, Jerzy Ostrowski, Marek Dedecjus
J. Clin. Med. 2021, 10(11), 2304
Selective Extracellular Signal-Regulated Kinase 1/2 (ERK1/2) Inhibition by the SCH772984 Compound Attenuates In Vitro and In Vivo Inflammatory Responses and Prolongs Survival in Murine Sepsis Models
Michał Kopczynski, Izabela Rumieńczyk, Maria Kulecka, Małgorzata Statkiewicz, Kazimiera Pyśniak, Zuzanna Sandowska-Markiewicz, Urszula Wójcik-Trechcińska, Krzysztof Goryca, Karolina Pyziak, Eliza Majewska, Magdalena Masiejczyk, Katarzyna Wójcik-Jaszczyńska, Tomasz Rzymski, Karol Bomsztyk, Jerzy Ostrowski, Michał Mikula
Int J Mol Sci.
The Strategies to Support the COVID-19 Vaccination with Evidence-Based Communication and Tackling Misinformation
Piotr Rzymski, Leszek Borkowski, Marcin Drąg, Robert Flisiak, Jacek Jemielity, Jacek Krajewski, Agnieszka Mastalerz-Migas, Andrzej Matyja, Krzysztof Pyrć, Krzysztof Simon, Michał Sutkowski, Jacek Wysocki, Joanna Zajkowska, Andrzej Fal
Vaccines, Vol. 9, Issue 2, 109
Structural Insights into the Interaction of Clinically Relevant Phosphorothioate mRNA Cap Analogs with Translation Initiation Factor 4E Reveal Stabilization via Electrostatic Thio-Effect
Marcin Warmiński, Joanna Kowalska, Elżbieta Nowak, Dorota Kubacka, Ryan Tibble, Renata Kasprzyk, Paweł J. Sikorski, John D. Gross, Marcin Nowotny, Jacek Jemielity*
ACS Chemical Biology, Vol. 16, Issue 2, 334-343
Tricks and threats of RNA viruses – towards understanding the fate of viral RNA
Łukasz Markiewicz, Karolina Drążkowska, Paweł J. Sikorski
RNA Biology, Vol. 18, Issue 5, 669-687
Evaluation of carboxyfluorescein-labeled 7-methylguanine nucleotides as probes for studying cap-binding proteins by fluorescence anisotropy
Anna Wojtczak, Renata Kasprzyk, Marcin Warmiński, Krystian Ubych, Dorota Kubacka, Paweł J. Sikorski, Jacek Jemielity, Joanna Kowalska
Scientific Reports, Vol. 11, Issue 1, 7687
Biomolecular condensates amplify mRNA decapping by biasing enzyme conformation
Ryan W. Tibble, Anaïs Depaix, Joanna Kowalska, Jacek Jemielity & John D. Gross
Nature Chemical Biology, Vol. 17, Issue 5, 615-623
RNA Ligation for Mono and Dually Labeled RNAs
Dr. Anaïs Depaix, Agnieszka Młynarska-Cieślak, Dr. Marcin Warmiński, Dr. Paweł J. Sikorski, Prof. Dr. Jacek Jemielity, Dr. Joanna Kowalska
Chemistry - A European Journal
Upregulation of RNA cap methyltransferase RNMT drives ribosome biogenesis during T cell activation
Alison Galloway, Aneesa Kaskar, Dimitrinka Ditsova, Abdelmadjid Atrih, Harunori Yoshikawa, Carolina Gomez-Moreira, Olga Suska, Marcin Warminski, Renata Grzela, Angus I Lamond, Edward Darżynkiewicz, Jacek Jemielity, Victoria H Cowling
Nucleic Acids Research, Vol. 49, Issue 12, 6722–6738
Cellular delivery of dinucleotides by conjugation with small molecules: targeting translation initiation for anticancer applications
Natalia Kleczewska, Paweł J. Sikorski, Zofia Warmińska, Łukasz Markiewicz, Renata Kasprzyk, Natalia Baran, Karina Kwapiszewska, Aneta Karpińska, Jarosław Michalski, Robert Holyst, Joanna Kowalska, Jacek Jemielity
Chemical Science, Vol. 30 Issue 12, 10242-10251

Renata Kasprzyk, prof. dr hab. Jacek Jemielity
ChemBioChem
Nucleotide-decorated AuNPs as probes for nucleotide-binding proteins
Olga Perzanowska, Maciej Majewski, Malwina Strenkowska, Paulina Głowala, Mariusz Czarnocki-Cieciura, Maciej Mazur, Joanna Kowalska, Jacek Jemielity
Scientific Reports, Vol. 11 (2021) 15741
Identification and evaluation of potential SARS-CoV-2 antiviral agents targeting mRNA cap guanine N7-Methyltransferase
Renata Kasprzyk, Tomasz J. Spiewla, Mirosław Śmietański, Sebastian Golojuch, Laura Vangeel, Steven De Jonghe, Dirk Jochmans, Johan Neyts, Joanna Kowalska, Jacek Jemielity
Antiviral Research
Ethylenediamine derivatives efficiently react with oxidized RNA 3′ ends providing access to mono and dually labelled RNA probes for enzymatic assays and in vivo translation
Adam Mamot, Pawel J Sikorski, Aleksandra Siekierska, Peter de Witte, Joanna Kowalska, Jacek Jemielity
Nucleic Acids Research
Reproducible and efficient new method of RNA 3′-end labelling by CutA nucleotidyltransferase-mediated CC-tailing
Rafał Tomecki, Kamil Kobylecki, Karolina Drazkowska, Malwina Hyjek-Skladanowska, Andrzej Dziembowski
RNA Biology
Novel N7-Arylmethyl Substituted Dinucleotide mRNA 5′cap Analogs: Synthesis and Evaluation as Modulators of Translation
Radosław Wójcik, Marek R. Baranowski, Łukasz Markiewicz, Dorota Kubacka, Marcelina Bednarczyk, Natalia Baran, Anna Wojtczak, Paweł J. Sikorski, Joanna Zuberek, Joanna Kowalska, Jacek Jemielity
Pharmaceutics 13(11), 1941
Molecule Edit Graph Attention Network: Modeling Chemical Reactions as Sequences of Graph Edits
Mikołaj Sacha, Mikołaj Błaż, Piotr Byrski, Paweł Dąbrowski-Tumański, Mikołaj Chromiński, Rafał Loska, Paweł Włodarczyk-Pruszyński, Stanisław Jastrzębski
J. Chem. Inf. Model. 2021, 61, 7, 3273–3284
Artificial photosynthesis for production of solar fuels and chemicals
Joanna Kargul, Miriam Izzo, Margot Jacquet
Chemical Valorization of Carbon Dioxide, Eds: Georgios Stefanidis, Andrzej Stankiewicz, Royal Society of Chemistry, Cambridge, UK.
Insight into structure-property relationship of organometallic terpyridine wires: Combined theoretical and experimental study
Sylwia Kozdra, Margot Jacquet, Joanna Kargul, Karol Hęclik, Adrianna Wójcika, Paweł Piotr Michałowski
Polyhedron, Vol. 213, 115628
Ultrafast methods for relaxation and diffusion
Ville-Veikko Telkki, Mateusz Urbańczyk, Vladimir Zhivonitko
Progress in Nuclear Magnetic Resonance Spectroscopy, Volumes 126–127, October–December 2021, Pages 101-120
Applications of alternative sampling methods
Krzysztof Kazimierczuk
Magnetic Resonance in Chemistry Volume 59, Issue 3, Pages 199 - 200
Benefits of time-resolved nonuniform sampling in reaction monitoring: The case of aza-Michael addition of benzylamine and acrylamide
Dariusz Gołowicz, Magdalena Kaźmierczak, Krzysztof Kazimierczuk
Magnetic Resonance in Chemistry 2021, 59(3), pp. 213–220
Clustered sparsity and Poisson-gap sampling
Paweł Kasprzak, Mateusz Urbańczyk, Krzysztof Kazimierczuk
Journal of Biomolecular NMR 2021, 75,401–416
NUScon: a community-driven platform for quantitative evaluation of nonuniform sampling in NMR
Yulia Pustovalova, Frank Delaglio, D. Levi Craft, Haribabu Arthanari, Ad Bax, Martin Billeter, Mark J. Bostock, Hesam Dashti, D. Flemming Hansen, Sven G. Hyberts, Bruce A. Johnson, Krzysztof Kazimierczuk, Hengfa Lu, Mark Maciejewski, Tomas M. Miljenović, Mehdi Mobli, Daniel Nietlispach, Vladislav Orekhov, Robert Powers, Xiaobo Qu, Scott Anthony Robson, David Rovnyak, Gerhard Wagner, Jinfa Ying, Matthew Zambrello, Jeffrey C. Hoch, David L. Donoho, Adam D. Schuyler
Magn. Reson., 2, 843–861, 2021
EBV load is associated with cfDNA fragmentation and renal damage in SLE patients
Anna Truszewska, Agnieszka Wirkowska, Kamila Gala, Piotr Truszewski, Łucja Krzemień-Ojak, Krzysztof Mucha, Leszek Pączek, Bartosz Foroncewicz
Lupus, Volume: 30 issue: 8, page(s): 1214-1225
Catulin Based Reporter System to Track and Characterize the Population of Invasive Cancer Cells in the Head and Neck Squamous Cell Carcinoma
Kamila Karpińska, Mateusz Gielata, Aleksandra Gwiazdowska, Łukasz Boryń, Agnieszka Kobielak
Int. J. Mol. Sci. 2022, 23(1), 140
Bell Nonlocality Is Not Sufficient for the Security of Standard Device-Independent Quantum Key Distribution Protocols
Máté Farkas, Maria Balanzó-Juandó, Karol Łukanowski, Jan Kołodyński, Antonio Acín
Physical Review Letters, Vol. 127, 050503
Discrimination and estimation of incoherent sources under misalignment
J. O. de Almeida, J. Kołodyński, C. Hirche, M. Lewenstein, and M. Skotiniotis
Physical Review A, Vol. 103, 022406
Projective measurements under qubit quantum channels
Javid Naikoo, Subhashish Banerjee, A. K. Pan, and Sibasish Ghosh
Physical Review A, Vol. 104, 042608
Asymmetric arms maximize visibility in hot-electron interferometers
Clarissa J. Barratt, Sungguen Ryu, Lewis A. Clark, H.-S. Sim, Masaya Kataoka, Clive Emary
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Noisy atomic magnetometry in real time
Júlia Amorós-Binefa, Jan Kołodyński
New Journal of Physics, Vol. 23, 123030
Effect of Jersey cow defatted dry milk on salivary volume and composition in elderly persons : a pilot study
Tomasz D Pieczonka, Aneta M Bragiel-Pieczonka, Yuko Takeuchi, Shizuko Yanagisawa, Masami Yoshioka, Yasuko Ishikawa
The Journal of Medical Investigation, 68(3.4):280-285
Mieszek włosowy jako doskonały model badawczy biologii komórek macierzystych
Krzysztof Kobielak
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Komórki macierzyste mini-organu paznokcia i ich udział w homeostazie, wzroście i regeneracji koniuszków palców u ssaków
Krzysztof Kobielak
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Inhibition of the ʟ-glutamine transporter ASCT2 sensitizes plasma cell myeloma cells to proteasome inhibitors
Monika K Prelowska, Dawid Mehlich, M Talha Ugurlu, Hanna Kędzierska, Aleksandra Ćwiek, Artur Kośnik, Klaudia Kamińska, Anna A Marusiak, Dominika Nowis
Cancer Letters
Tks5 Regulates Synaptic Podosome Formation and Stabilization of the Postsynaptic Machinery at the Neuromuscular Junction
Marcin Pęziński, Kamila Maliszewska-Olejniczak, Patrycja Daszczuk, Paula Mazurek, Paweł Niewiadomski, Maria Jolanta Rędowicz
International Journal of Molecular Sciences, 22(21), 12051
Targeting of SET/I2PP2A oncoprotein inhibits Gli1 transcription revealing a new modulator of Hedgehog signaling
Iliana Serifi, Simoni Besta, Zoe Karetsou, Panagiota Giardoglou, Dimitris Beis, Pawel Niewiadomski, Thomais Papamarcaki
Scientific Reports, 11(1), 1-13
Report of the TopoInVis TTK Hackathon: Experiences, Lessons Learned, and Perspectives
Jonas Lukasczyk, Jakob Beran, Wito Engelke, Martin Falk, Anke Friederici, Christoph Garth, Lutz Hofmann, Ingrid Hotz, Petar Hristov, Wiebke Köpp, Talha Bin Masood, Małgorzata Olejniczak, Paul Rosen, Jan-Tobias Sohns, Tino Weinkauf, Kilian Werner, Julien Tierny
Topological Methods in Data Analysis and Visualization VI, pp 359-373
Relativistic frozen density embedding calculations of solvent effects on the nuclear magnetic resonance shielding constants of transition metal nuclei
Małgorzata Olejniczak ,Andrej Antušek, Michał Jaszuński
International Journal of Quantum Chemistry, Vol. 121, e26789
Entanglement distribution with wavevector-multiplexed quantum memory
Michał Lipka, Mateusz Mazelanik, and Michał Parniak
New Journal of Physics Vol. 23, Art. No. 053021
Fast imaging of multimode transverse–spectral correlations for twin photons
Michał Lipka, Michał Parniak
Optics Letters Vol. 46, Issue 13, pp. 3009-3012
Calibration of spin-light coupling by coherently induced Faraday rotation
Rodrigo A Thomas, Christoffer Østfeldt, Christian Bærentsen, Michał Parniak, Eugene S Polzik
Optics Express Vol. 29, Issue 15, pp. 23637-23653
Single-Photon Hologram of a Zero-Area Pulse
Michał Lipka, Michał Parniak
Physical Review Letters, Vol. 127, Issue 16, Art. No. 163601
Entropy-based distance cutoff for protein internal contact networks
Marcin Sobieraj, Piotr Setny
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Transient Excursions to Membrane Core as Determinants of Influenza Virus Fusion Peptide Activity
Remigiusz Worch, Anita Dudek, Paulina Borkowska, Piotr Setny
Int J Mol Sci., 22:5301
Spreading Depressions and Periinfarct Spreading Depolarizations in the Context of Cortical Plasticity
Szewczyk Łukasz; Urban Paulina
Neuroscience
From DNA human sequence to the chromatin higher order organisation and its biological meaning: Using biomolecular interaction networks to understand the influence of structural variation on spatial genome organisation and its functional effect
Plewczyński Dariusz; Sengupta Kaustav
Seminars in Cell & Developmental Biology
Consensus-based identification and comparative analysis of structural variants and their influence on 3D genome structure using long- and short-read sequencing technologies in polish families
Plewczyński Dariusz; Sachin Gadakh, Kaustav Sengupta, Karolina Jodkowska,
Springer Lecture Notes in Networks and Systems
MultiNet: A diffusion based approach to assign directionality in protein interactions using a consensus of eight protein interaction datasets
Plewczyński Dariusz; Sengupta Kaustav
Springer Lecture Notes in Networks and Systems
High-resolution, ultrasensitive and quantitative DNA double-strand break labeling in eukaryotic cells using i-BLESS
Anna Biernacka, Magdalena Skrzypczak, Yingjie Zhu, Philippe Pasero, Maga Rowicka, Krzysztof Ginalski
Nature Protocols volume 16, pages 1034–1061 (2021)
Potent but transient immunosuppression of T-cells is a general feature of CD71 + erythroid cells
Tomasz M. Grzywa, Anna Sosnowska, Zuzanna Rydzynska, Michal Lazniewski, Dariusz Plewczynski, Klaudia Klicka, Milena Malecka-Gieldowska, Anna Rodziewicz-Lurzynska, Olga Ciepiela, Magdalena Justyniarska, Paulina Pomper, Marcin M. Grzybowski, Roman Blaszczyk, Michal Wegrzynowicz, Agnieszka Tomaszewska, Grzegorz Basak, Jakub Golab, Dominika Nowis
Commun Biol 2021 Dec 10;4(1):1384
Genome-wide analysis of 10664 SARS-CoV-2 genomes to identify virus strains in 73 countries based on single nucleotide polymorphism
Nimisha Ghosh, Indrajit Saha, Nikhil Sharma, Suman Nandi, Dariusz Plewczynski
Virus Res. 2021 Jun;298:198401
Experiment-friendly formulation of quantum backflow
Marek Miller, Woo Chee Yuan, Rainer Dumke, Tomasz Paterek
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Cooperation and dependencies in multipartite systems
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Experimental Progress on Quantum Coherence: Detection, Quantification, and Manipulation
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Operational Resource Theory of Imaginarity
Kang-Da Wu, Tulja Varun Kondra, Swapan Rana, Carlo Maria Scandolo, Guo-Yong Xiang, Chuan-Feng Li, Guang-Can Guo, Alexander Streltsov
Phys. Rev. Lett. 126, 090401 (2021)
Resource theory of imaginarity: Quantification and state conversion
Kang-Da Wu, Tulja Varun Kondra, Swapan Rana, Carlo Maria Scandolo, Guo-Yong Xiang, Chuan-Feng Li, Guang-Can Guo, Alexander Streltsov
Phys. Rev. A 103, 032401 (2021)
Catalytic transformations of pure entangled states
Tulja Varun Kondra, Chandan Datta, Alexander Streltsov
Phys. Rev. Lett. 127, 150503 (2021)
Perfect discrimination of quantum measurements using entangled systems
Chandan Datta, Tanmoy Biswas, Debashis Saha, Remigiusz Augusiak
New J. Phys. 23 (2021) 043021
Generating and detecting bound entanglement in two-qutrits using a family of indecomposable positive maps
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J. Phys. Commun. 5 (2021) 065008
Slipknotted and unknotted monovalent cation-proton antiporters evolved from a common ancestor.
Vasilina Zayats, Agata P. Perlinska, Aleksandra I. Jarmolinska, Borys Jastrzebski, Stanislaw Dunin-Horkawicz, Joanna I. Sulkowska
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SARS-CoV-2 Papain-Like Protease Potential Inhibitors—In Silico Quantitative Assessment.
Adam Stasiulewicz, Alicja W. Maksymiuk, Mai Lan Nguyen, Barbara Bełza, Joanna I. Sulkowska
International journal of molecular sciences, 22(8), 3957
Lasso Proteins—Unifying Cysteine Knots and Miniproteins
Bartosz Ambroży Greń, Paweł Dąbrowski-Tumański, Wanda Niemyska Joanna Ida Sułkowska
Polymers, 13(22), 3988
Socio-Eco-Evolutionary Dynamics in Cities
Simone Des Roches, Kristien I. Brans, Max R. Lambert, L. Ruth Rivkin, Amy Marie Savage, Christopher J. Schell, Cristian Correa, Luc De Meester, Sarah E. Diamond, Nancy B. Grimm, Nyeema C. Harris, Lynn Govaert, Andrew P. Hendry, Marc T. J. Johnson, Jason Munshi-South, Eric P. Palkovacs, Marta Szulkin, Mark C. Urban, Brian C. Verrelli, Marina Alberti
Evolutionary Applications, Volume 14, Issue 1, pages 248-267
Urban metal pollution explains variation in reproductive outputs in great tits and blue tits
Marion Chatelain, Sylvie Massemin, Sandrine Zahn, Eliza Kurek, Ewa Bulska, Marta Szulkin
Science of the Total Environment, Volume 776, 145966, pages 1-11
Testing for parallel genomic and epigenomic footprints of adaptation to urban life in a passerine bird.
Aude E. Caizergues, Jeremy Le Luyer, Arnaud Grégoire, Marta Szulkin, Juan-Carlos Señar, Anne Charmantier, Charles Perrier
Evolutionary Applications
Replicated, Urban-Driven Exposure to Metal Pollutants in Two Passerines. Scientific Reports.
Marion Chatelain, Arnaud Da Silva, Marta Celej, Eliza Kurek, Ewa Bulska, Michela Corsini, Marta Szulkin
Scientific Reports., 19662(2021)
Development of a Novel Nanoarchitecture of the Robust Photosystem I from a Volcanic Microalga Cyanidioschizon merolae on Single-Layer Graphene for Improved Photocurrent Generation
Miriam Izzo, Margot Jacquet, Takayuki Fujiwara, Ersan Harputlu, Radosław Mazur, Piotr Wróbel, Tomasz Góral, C. Gokhan Unlu, Kasim Ocakoglu, Shinya Miyagishima, Joanna Kargul
International Journal of Molecular Sciences, Vol. 22, pp 8396, 2021
Feral rabbit populations in a peri-urban area: insights about invasion dynamics and potential management strategies
Davide Sogliani, Jacopo Cerri, Ramj Turetta, Massimo Crema, Michela Corsini, Emiliano Mori
European Journal of Wildlife Research, 60(2021)
Cytosolic aggregation of mitochondrial proteins disrupts cellular homeostasis by stimulating the aggregation of other proteins
Urszula Nowicka, Piotr Chroscicki, Karen Stroobants, Maria Sladowska, Michal Turek, Barbara Uszczynska-Ratajczak, Rishika Kundra, Tomasz Goral, Michele Perni, Christopher M Dobson, Michele Vendruscolo, Agnieszka Chacinska
eLife Sciences
Mutations of N1 riboswitch affect its dynamics and recognition by neomycin through conformational selection
Piotr Chyży, Marta Kulik, Suyong Re, Yuji Sugita, Joanna Trylska
Front. Mol. Biosciences, vol. 8, 633130
Vitamin B12-peptide nucleic acids use the BtuB receptor to pass through the E. coli outer membrane
Tomasz Pieńko, Jakub Czarnecki, Marcin Równicki, Monika Wojciechowska, Aleksandra J Wierzba, Dorota Gryko, Dariusz Bartosik, Joanna Trylska
Biophys. J., vol. 120, p. 725–737
Vitamin B12 – Peptide Nucleic Acid Conjugates
Monika Wojciechowska, Joanna Trylska
Methods in Molecular Biology, Springer, vol. 2355, p. 65-82
Crowding affects structural dynamics and contributes to membrane association of the NS3/4A complex
Natalia Ostrowska, Michael Feig, JoannaTrylska
Biophys. J., 20:3795–3806
Insight into the binding and hydrolytic preferences of hNudt16 based on nucleotide diphosphate substrates
Magdalena Chrabąszczewska, Maria Winiewska-Szajewska, Natalia Ostrowska, Elżbieta Bojarska, Janusz Stępiński, Łukasz Mancewicz, Maciej Łukaszewicz, Joanna Trylska, Michał Taube, Maciej Kozak, Edward Darżynkiewicz, Renata Grzela
Int. J. Mol. Sci. 22(20), 10929
Stapled anoplin as an antibacterial agent
Monika Wojciechowska, Julia Macyszyn, Joanna Miszkiewicz, Renata Grzela, Joanna Trylska
Frontiers in Microbiology, vol. 12, 772038
Editorial: Combining Simulations, Theory, and Experiments into Multiscale Models of Biological Events
Fabio Trovato, Joanna Trylska, Peter J. Bond, Peter G. Wolynes
Front. Mol. Biosciences, vol. 8, 797754
Superseding ß-Diketiminato Ligands: An Amido Imidazoline-2-Imine Ligand Stabilizes the Exhaustive Series of B=X Boranes (X = O, S, Se, Te)
Hadi Dolati, Lars Denker, Dr. Bartosz Trzaskowski ,Dr. René Frank
Angew. Chem. Int. Ed, Volume 60, Issue 9, pages 4633-4639
Design, Synthesis and Biological Evaluation of a Series of 5- and 7-hydroxycoumarin Derivatives as 5-HT1A Serotonin Receptor Antagonists
Kinga Ostrowska, Anna Leśniak, Zuzanna Czarnocka, Jagoda Chmiel, Magdalena Bujalska-Zadrożny, Bartosz Trzaskowski
Pharmaceuticals, 2021, 14(3), 179
The influence of lipid membranes on fluorescent probes’ optical properties
Silvio Osella, Stefan Knippenberg
Biochimica et Biophysica Acta (BBA) - Biomembranes, Volume 1863, Issue 2, 183494
Synthesis of Nonplanar Graphene Nanoribbon with Fjord Edges
Xuelin Yao, Wenhao Zheng, Silvio Osella, Zijie Qiu, Shuai Fu, Dieter Schollmeyer, Beate Müller, David Beljonne, Mischa Bonn, Hai I. Wang, Klaus Müllen, and Akimitsu Narita
Journal of the American Chemical Society, 143, 15, 5654–5658
Challenges for Incorporating Optical Switchability in Organic-Based Electronic Devices
Valentin Diez Cabanes, Colin Van Dyck, Silvio Osella, David Cornil, Jérôme Cornil
ACS Appl. Mater. Interfaces, 13, 27737–27748
Lighting-up nanocarbons through hybridization: optoelectronic properties and perspectives
Silvio Osellaa, Mengjiao Wang, Enzo Menna ,Teresa Gatti
Optical Materials: X 12, 100100
Design Principles and Insights into the Liquid-Phase Exfoliation of Alpha-MoO3 for the Production of Colloidal 2D Nano-inks in Green Solvents
Matteo Crisci, Paolo Dolcet, Jijin Yang, Marco Salerno, Péter Bélteky, Ákos Kukovecz, Francesco Lamberti, Stefano Agnoli, Silvio Osella, Silvia Gross, and Teresa Gatti
Journal of Physical Chemistry C, 126, 1, 404
Electrochemical Deposition of a Single-Crystalline Nanorod Polycyclic Aromatic Hydrocarbon Film with Efficient Charge and Exciton Transport
Dr. Cheng Zeng, Dr. Wenhao Zheng, Prof. Dr. Hong Xu, Dr. Silvio Osella, Dr. Wei Ma, Dr. Hai I. Wang, Dr. Zijie Qiu, Dr. Ken-ichi Otake, Prof. Dr. Wencai Ren, Prof. Dr. Huiming Cheng, Prof. Dr. Klaus Müllen, Prof. Dr. Mischa Bonn, Prof. Dr. Cheng Gu, Prof. Dr. Yuguang Ma
Angew. Chem. Int. Ed.
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Xu Wang, Ji Ma, Wenhao Zheng, Silvio Osella, Nicolás Arisnabarreta, Jörn Droste, Gianluca Serra, Oleksandr Ivasenko, Andrea Lucotti, David Beljonne, Mischa Bonn, Xiangyang Liu, Michael Ryan Hansen, Matteo Tommasini, Steven De Feyter, Junzhi Liu, Hai I. Wang, and Xinliang Feng
J. Am. Chem. Soc. 2022, 144, 1, 228–235
Real-time ghost imaging of Bell-nonlocal entanglement between a photon and a quantum memory
Mateusz Mazelanik, Adam Leszczyński, Michał Lipka, Wojciech Wasilewski, Michał Parniak
Quantum Vol. 5, page 493
Phylogenetics and phylogeography of red deer mtDNA lineages during the last 50 000 years in Eurasia
Karolina Doan, Magdalena Niedziałkowska, Krzysztof Stefaniak, Maciej Sykut, Bogumiła Jędrzejewska, Urszula Ratajczak-Skrzatek, Natalia Piotrowska, Bogdan Ridush, Frank E Zachos, Danijela Popović, Mateusz Baca, Paweł Mackiewicz, Pavel Kosintsev, Daniel Makowiecki, Maxim Charniauski, Gennady Boeskorov, Alexey Anatolievich Bondarev, Gabriel Danila, Josip Kusak, Eve Rannamäe, Urmas Saarma, Marine Arakelyan, Ninna Manaseryan, Dariusz Krasnodębski, Vadim Titov, Pavel Hulva, Adrian Bălășescu, Katerina Trantalidou, Vesna Dimitrijević, Andrey Shpansky, Oleksandr Kovalchuk, Alexey M Klementiev, Irina Foronova, Dmitriy G Malikov, Anna Juras, Pavel Nikolskiy, Semyon Egorovich Grigoriev, Maksim Yurievich Cheprasov, Gavril Petrovich Novgorodov, Alexandr Dmitrievich Sorokin, Jarosław Wilczyński, Albert Vasilievich Protopopov, Grzegorz Lipecki, Ana Stanković
Zoological Journal of the Linnean Society, Volume 194, Issue 2, February 2022, Pages 431–456
The girl with finches: a unique post-medieval burial in Tunel Wielki Cave, southern Poland
Michał Wojenka, Elżbieta Jaskulska, Danijela Popović, Mateusz Baca, Frog, Rafał Fetner, Krzysztof Wertz, Karolina Rataj, Natalia Gryczewska, Tymoteusz Kosiński, Małgorzata Kot
Praehistorische Zeitschrift
A refined proposal for the origin of dogs: the case study of Gnirshöhle, a Magdalenian cave site
Chris Baumann, Saskia Pfrengle, Susanne C. Münzel, Martyna Molak, Tatiana R. Feuerborn, Abagail Breidenstein, Ella Reiter, Gerd Albrecht, Claus-Joachim Kind, Christian Verjux, Charlotte Leduc, Nicholas J. Conard, Dorothée G. Drucker, Liane Giemsch, Olaf Thalmann, Hervé Bocherens & Verena J. Schuenemann
Scientific reports, Volume 11, Issue 1, pages 1-14
The Tien Shan vole (Microtus ilaeus; Rodentia: Cricetidae) as a new species in the Late Pleistocene of Europe
Mateusz Baca, Danijela Popović, Anna Lemanik, Helen Fewlass, Sahra Talamo, Jan Zima, Bogdan Ridush, Vasil Popov, Adam Nadachowski
Ecology and Evolution
Mycobacterium leprae diversity and population dynamics in medieval Europe from novel ancient genomes
Saskia Pfrengle, Judith Neukamm, Meriam Guellil, Marcel Keller, Martyna Molak, Charlotte Avanzi, Alena Kushniarevich, Núria Montes, Gunnar U. Neumann, Ella Reiter, Rezeda I. Tukhbatova, Nataliya Y. Berezina, Alexandra P. Buzhilova, Dmitry S. Korobov, Stian Suppersberger Hamre, Vitor M. J. Matos, Maria T. Ferreira, Laura González-Garrido, Sofia N. Wasterlain, Célia Lopes, Ana Luisa Santos, Nathalie Antunes-Ferreira, Vitória Duarte, Ana Maria Silva, Linda Melo, Natasa Sarkic, Lehti Saag, Kristiina Tambets, Philippe Busso, Stewart T. Cole, Alexei Avlasovich, Charlotte A. Roberts, Alison Sheridan, Craig Cessford, John Robb, Johannes Krause, Christiana L. Scheib, Sarah A. Inskip & Verena J. Schuenemann
BMC Biology, Vol 19, Art no 220
Variable-temperature NMR spectroscopy for metabolite identification in biological materials
Ewa K. Nawrocka, Mateusz Urbańczyk, Kamil Kozińskia , Krzysztof Kazimierczuk
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MLK4 regulates DNA damage response and promotes triple-negative breast cancer chemoresistance
Dawid Mehlich, Michał Łomiak, Aleksandra Sobiborowicz, Alicja Mazan, Dagmara Dymerska, Łukasz M Szewczyk, Anna Mehlich, Agnieszka Borowiec, Monika K Prełowska, Adam Gorczyński, Paweł Jabłoński, Ewa Iżycka-Świeszewska, Dominika Nowis, Anna A Marusiak
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Synthetic cells in biomedical applications
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Chronic fluoxetine treatment impairs motivation and reward learning by affecting neuronal plasticity in the central amygdala
Alicja Puścian, Maciej Winiarski, Szymon Łęski, Łukasz Charzewski, Tomasz Nikolaev, Joanna Borowska, Jakub M. Dzik, Monika Bijata, Hans-Peter Lipp, Magdalena Dziembowska, Ewelina Knapska
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PTPN4 germline variants result in aberrant neurodevelopment and growth
Joanna J.Chmielewska, Deepika Burkardt, Jorge Luis Granadillo, Rachel Slaugh, Shamile Morgan, Joshua Rotenberg, Boris Keren, Cyril Mignot, Luis Escobar, Peter Turnpenny, Melissa Zuteck, Laurie H. Seaver, Rafal Ploski, Magdalena Dziembowska, Anthony Wynshaw-Boris, Abidemi Adegbola
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Ancient genomes reveal long-range influence of the pre-Columbian culture and site of Tiwanaku
Popović D, Molak M, Ziółkowski M, Vranich A, Sobczyk M, Vidaurre DU, Agresti G, Skrzypczak M, Ginalski K, Lamnidis TC, Nakatsuka N, Mallick S, Baca M.
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PTPN4 germline variants result in aberrant neurodevelopment and growth
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Human Genetics and Genomics Advances, 2(3):100033
Rossmann-toolbox: a deep learning-based protocol for the prediction and design of cofactor specificity in Rossmann fold proteins
Kamil Kamiński, Jan Ludwiczak, Maciej Jasiński, Adriana Bukala, Rafal Madaj, Krzysztof Szczepaniak, Stanisław Dunin-Horkawicz
Briefings in Bioinformatics
Development of a Novel Nanoarchitecture of the Robust Photosystem I from a Volcanic Microalga Cyanidioschyzon merolae on Single Layer Graphene for Improved Photocurrent Generation
Izzo M, Jacquet M, Fujiwara T, Harputlu E, Mazur R, Wróbel P, Góral T, Unlu Gokhan C, Ocakoglu K, Miyagishima S, Kargul J
International Journal of Molecular Sciences 22, 8396
PTD4 Peptide Increases Neural Viability in an In Vitro Model of Acute Ischemic Stroke
Mazuryk J., Puchalska I., Koziński K., Ślusarz M.J., Ruczyński J., Rekowski P., Rogujski P., Płatek R., Wiśniewska M.B., Piotrowski A., Janus Ł, Skowron P.M., Pikuła M., Sachadyn P., Rodziewicz-Motowidło S., Czupryn A., Mucha P.
International Journal of Molecular Sciences 22(11), 6086
Molecular mechanism of direct electron transfer in the robust cytochrome-functionalised graphene nanosystem
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Development of a universal conductive platform for anchoring photo- and electroactive proteins using organometallic terpyridine molecular wires
Jacquet M, Izzo M, Osella S, Kozdra S, Michałowski PP, Gołowicz D, Kazimierczuk K, Gorzkowski MT, Lewera, A, Teodorczyk, M, Trzaskowski B, Jurczakowski R, Gryko DT*, Kargul J*
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Enhancement of direct electron transfer in graphene bioelectrodes containing novel cytochrome c553 variants with optimized heme orientation
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The Potential of Nail Mini-Organ Stem Cells in Skin, Nail and Digit Tips Regeneration.
Pulawska-Czub, A., Pieczonka, T. D., Mazurek, P., & Kobielak, K.
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Application of Biopolymeric Electrospun Nanofibers in Biological Science
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Gelatin Based Hydrogels for Tissue Engineering and Drug Delivery Applications
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Nanohybrids: Future Materials for Biomedical Applications, 87(2021), 244-270
High-frequency broadband laser phase noise cancellation using a delay line
Parniak, M., Galinskiy, I., Zwettler, T., & Polzik, E. S.
Optics Express, 29(5), 6935-6946
Massively-multiplexed generation of Bell-type entanglement using a quantum memory
Lipka, M., Mazelanik, M., Leszczyński, A., Wasilewski, W., & Parniak, M.
Communications Physics, 4(1), 1-10
Temperature as an extra dimension in multidimensional protein NMR.
Shchukina, A., Małecki, P., Mateos, B., Nowakowski, M., Urbańczyk, M., Kontaxis, G., ... & Kazimierczuk, K.
Chemistry–A European Journal, 27(5), 1753-1767
Socio‐eco‐evolutionary dynamics in cities
Des Roches, S., Brans, K. I., Lambert, M. R., Rivkin, L. R., Savage, A. M., Schell, C. J., ... & Alberti, M.
Evolutionary Application
Spreading Depressions and Periinfarct Spreading Depolarizations in the Context of Cortical Plasticity
Sadowska, M., Mehlhorn, C., Średniawa, W., Szewczyk, Ł. M., Szlachcic, A., Urban, P., ... & Jabłonka, J. A
Neuroscience, 453, 81-101, 2021
Xpo7 negatively regulates Hedgehog signaling by exporting Gli2 from the nucleus
Markiewicz, Ł., Uśpieński, T., Baran, B., Niedziółka, S. M., & Niewiadomski, P.
Cellular Signalling, 109907, 2021
Best practices in photoelectrochemistry
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The hunt for ancient prions: Archaeal prion-like domains form amyloid-based epigenetic elements
Zajkowski T, Lee MD, Mondal SS, Carbajal A, Dec R, Brennock PD, Piast RW, Snyder JE, Bense NB, Dzwolak W, Jarosz DF, Rothschild LJ.
Mol Biol Evol. 2021